| Literature DB >> 34559467 |
Ling Zhao1, Shufen Tan2, Qiwei Liao3, Xia Li4, Tingyu Ke1, Shuqing Li4.
Abstract
INTRODUCTION: Patients with comorbidity of ischemic stroke (IS) and diabetes mellitus (DM) show poor neurological functional recovery, and ischemic postconditioning (IPOC) should be considered a powerful neuroprotective method for IS. However, whether it should be introduced for patients with IS and DM remains controversial. This study established a DM with IS (DMIS) tree shrew model, which was intervened by IPOC to assess its neuroprotective effects and also to analyze the relevant mechanism by RNA-sequence and bioinformatics analysis.Entities:
Keywords: RNA-sequence analysis of postconditioning; diabetes mellitus; ischemic stroke; neuroprotective effect
Mesh:
Substances:
Year: 2021 PMID: 34559467 PMCID: PMC8613421 DOI: 10.1002/brb3.2354
Source DB: PubMed Journal: Brain Behav Impact factor: 2.708
Comparison of body weight and blood biochemical indexes in tree shrews (Mean± SD)
| Indexes | Control group | DMIS group | IPOC group | F |
|
|---|---|---|---|---|---|
| Initial Body weight | 138.97±9.61 | 134.32±15.73 | 135.43±14.74 | 0.304 | 0.587 |
| Body weight after stroke | 141.15±11.76 | 120.29±13.82 | 117.12±12.68 | 15.91 | <0.001 |
| Total protein | 52.96±3.62 | 53.93±3.26 | 53.96±2.87 | 0.422 | 0.522 |
| ALB | 35.93±2.99 | 35.66±4.22 | 42.51±12.46 | 3.212 | 0.0857 |
| ALT | 207.88±289.94 | 117.78±44.58 | 154.00±124.21 | 0.386 | 0.54 |
| GLOB | 21.93±7.59 | 23.21±7.34 | 26.53±11.49 | 1.173 | 0.29 |
| Cr | 14.00±6.75 | 17.75±8.57 | 17.00±4.95 | 0.847 | 0.367 |
| UREA | 13.00±7.74 | 11.96±3.99 | 13.11±7.10 | 0.001 | 0.972 |
| GLU | 5.38±0.52 | 5.35±1.09 | 5.78±1.09 | 0.816 | 0.375 |
| GLU after DM modeling | 6.52±1.32 | 32.29±6.08 | 23.04±4.13 | 66.07 | 2.38E‐08 |
| UA | 23.32±12.77 | 13.71±11.60 | 14.20±6.48 | 3.306 | 0.0815 |
| LDH1 | 6.97±3.99 | 24.49±17.22 | 20.46±13.28 | 5.026 | 0.0345 |
| CK‐MB | 42.50±15.78 | 136.00±161.30 | 79.63±52.48 | 0.641 | 0.431 |
| LDH | 318.50±107.67 | 437.50±206.40 | 376.63±113.58 | 0.68 | 0.418 |
| HBDH | 356.50±90.40 | 573.88±254.82 | 513.25±220.79 | 2.722 | 0.112 |
| CK | 223.13±51.73 | 264.38±79.54 | 239.38±86.36 | 0.217 | 0.646 |
| TB | 19.60±8.15 | 12.59±4.31 | 10.21±1.98 | 13.39 | 0.00124 |
| AST | 252.09±130.15 | 277.61±105.02 | 191.12±80.70 | 1.455 | 0.239 |
| CHOL | 2.85±0.73 | 7.80±3.41 | 6.53±3.08 | 8.445 | 0.00775 |
| HDL‐CH | 1.84±0.40 | 1.50±0.53 | 1.93±0.40 | 0.182 | 0.673 |
| LDL‐CH | 1.53±0.37 | 3.06±0.95 | 2.32±0.89 | 4.6 | 0.0423 |
| TG | 1.02±0.45 | 1.73±0.29 | 1.66±0.64 | 7.943 | 0.00952 |
| CRP | 0.51±0.24 | 1.43±0.53 | 0.98±0.60 | 4.269 | 0.0498 |
| TPT | 1.67±1.87 | 0.77±0.52 | 0.73±0.66 | 2.838 | 0.105 |
| MYO | 63.91±53.90 | 45.86±21.80 | 41.21±13.80 | 1.948 | 0.176 |
FIGURE 1Transmission electron microscopy (TEM) was used to observe the changes of neural ultrastructure in ischemic cortical areas
FIGURE 2Comparison of gene expression levels in each group with FPKM distribution and biological repeat correlation tests. A: FPKM density distribution plot; B: violin plot of FPKM distribution; C: RNA‐Seq correlation tests
The top 3 up‐regulated and down‐regulated differential expression genes between DMIS and IPOC group
| Gene_id | log2FoldChange |
| Blast swiss prot |
|---|---|---|---|
| Novel01439 | 5.495 | 0.002432 | ‐//‐ |
| 102483157 | 4.8801 | 0.0036411 | Homeobox protein SIX3 |
| Novel00930 | 3.9866 | 5.02E‐35 | uncharacterized protein LOC105490759 isoform X1 |
| 102503204 | −6.5808 | 0.010365 | HLA class II histocompatibility antigen, DQ beta 1 chain |
| 102476790 | −4.859 | 0.013696 | CAS1 domain‐containing protein 1 |
| 102476854 | −4.2486 | 0.0069143 | Cytokine receptor‐like factor 2 |
FIGURE 3Gene ontology (GO) enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathway analysis of differentially expressed genes in each group. The GO analysis of upregulated genes (a) and downregulated genes (b) between the DMIS and IPOC groups; the KEGG signaling pathway analysis of upregulated genes (c) and downregulated genes (d) between the DMIS and IPOC groups