| Literature DB >> 34557456 |
Yue Luo1,2, Junhao Lin1,2, Jiakang Zhang1,2, Zhenghui Song1,2, Dayong Zheng1,2, Fengsheng Chen1,2, Xuefen Zhuang1,2, Aimin Li1,2, Xinhui Liu1,2.
Abstract
Long noncoding RNAs (lncRNAs) have been substantially reported to have critical roles in regulating tumorigenesis in recent years. However, the expression pattern and biological function of SNHG17 in hepatocellular carcinoma (HCC) remain unclear. Bioinformatics analysis and qRT-PCR were performed to detect the expression pattern of SNHG17 in HCC tissues, adjacent nontumorous tissues, and cell lines. The effect of SNHG17 on proliferation, migration, and apoptosis of HCC was investigated by knockdown and overexpressing SNHG17 in HCC cell lines. RNA sequencing was utilized to explore the underlying mechanism. Utilizing publicly available TCGA-LIHC, GSE102079 HCC datasets, and qRT-PCR, we found SNHG17 was significantly upregulated in HCC tissues and cell lines and was notably associated with larger tumor size, poorly differentiation, presence of vascular invasion, and advanced TNM stage. Furthermore, gain- and loss-of-function studies demonstrated that SNHG17 promoted cell proliferation and migration and inhibited apoptosis of HCC. By employing RNA sequencing, we found knockdown of SNHG17 caused 1037 differentially expressed genes, highly enriched in several pathways, including metabolic, PI3K-Akt, cell adhesion, regulation of cell proliferation, and apoptotic pathway; among them, 92 were overlapped with SNHG17-related genes in the TCGA-LIHC dataset. Furthermore, ERH, TBCA, TDO2, and PDK4 were successfully validated and found significantly dysregulated in HCC tissues. Moreover, HCC patients with higher SNHG17 expression had a relatively poor overall survival and disease-free survival, and ERH and PDK4 also played a marked role in the prognosis of HCC. Broadly, our findings illustrate that SNHG17 acts as a noncoding oncogene in HCC progression, suggesting its potential value as a novel target for HCC therapy.Entities:
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Year: 2021 PMID: 34557456 PMCID: PMC8455207 DOI: 10.1155/2021/9990338
Source DB: PubMed Journal: Can J Gastroenterol Hepatol ISSN: 2291-2789
Figure 1SNHG17 expression was upregulated in HCC tissues and cell lines. (a) SNHG17 was upregulated in HCC tissues (n = 374) compared with adjacent tissues (n = 50) in the TCGA-LIHC dataset. (b) SNHG17 was upregulated in HCC tissues (n = 152) compared with adjacent tissues (n = 91) in the GSE102079 dataset. (c) SNHG17 was upregulated in HCC tissues compared with corresponding nontumorous tissues in the TCGA-LIHC dataset (n = 50). (d) SNHG17 was upregulated in HCC tissues compared with corresponding nontumorous tissues (n = 28), which was examined by qRT-PCR. (e) Expression levels of SNHG17 were examined in HCC cell lines and normal hepatic epithelium cell line (LO2). P < 0.05, P < 0.01, and P < 0.001.
Figure 2SNHG17 promoted cell proliferation of HCC. (a-b) SNHG17 expression level was determined by qRT-PCR in HCC cells as indicated. (c-d) CCK8 assays were employed to detected the effect of SNHG17 on the cell viability of PLC/PRF/5 and Hep3B cells. (e-f) CCK8 assays were employed to detect the effect of SNHG17 on the cell viability of SMMC-7721 and HuH-7 cells. P < 0.05 and P < 0.001.
Figure 3SNHG17 promoted cell migration of HCC. (a) The representative images of transwell assay in PLC/PRF/5 and Hep3B cells (magnification: 100X). (b) Quantitative data of transwell results in PLC/PRF/5 and Hep3B cells. (c) The representative images of transwell assay in SMMC-7721 and HuH-7 cells. Scale bar represents 200 pixels. (d) Quantitative data of transwell results in SMMC-7721 and HuH-7 cells. P < 0.01 and P < 0.001.
Figure 4SNHG17 inhibited cell apoptosis of HCC. (a-b) Flow cytometry assays were employed to analyze the function of SNHG17 in apoptosis of Hep3B cells. (c-d) Flow cytometry assays were employed to analyze the function of SNHG17 in apoptosis of SMMC-7721. P < 0.001.
Figure 5RNA sequencing and bioinformatics analysis explore the downstream genes regulated by SNHG17 in HCC. (a) Mean-centered, hierarchical clustering of 1037 genes altered (≥2-fold change, P < 0.05) after knockdown of SNHG17 in Hep3B cells, with three repeats. (b) The (A) Venn diagrams represent the overlap of downregulated genes in RNA-seq data and SNHG17-positive-related genes in TCGA-LIHC. The (B) Venn diagrams represent the overlap of upregulated genes in RNA-seq data and SNHG17-negative-related genes in TCGA-LIHC. (c) qRT-PCR was performed to detect the expression of indicated genes in (A) PLC/PRF/5 and (B) Hep3B cells. (d) qRT-PCR was performed to detect the expression of indicated genes in (A) SMMC-7721 and (B) HuH-7 cells. P < 0.05, P < 0.01, P < 0.001, and NS, not significant.
Figure 6SNHG17 was correlated with poor prognosis of HCC. (a–d) Elevated SNHG17 expression was correlated with larger tumor size, poor differentiation, the presence of vascular invasion, and advanced TNM stage in HCC patients. (e-f) Kaplan–Meier curves for SNHG17 in HCC. (g-h) Kaplan–Meier curves for ERH in HCC. (i-j) Kaplan–Meier curves for PDK4 in HCC. P < 0.05 and P < 0.01.