Literature DB >> 34541122

Generation of Targeted Knockout Mutants in Arabidopsis thaliana Using CRISPR/Cas9.

Florian Hahn1, Marion Eisenhut1, Otho Mantegazza1, Andreas P M Weber1.   

Abstract

The CRISPR/Cas9 system has emerged as a powerful tool for gene editing in plants and beyond. We have developed a plant vector system for targeted Cas9-dependent mutagenesis of genes in up to two different target sites in Arabidopsis thaliana. This protocol describes a simple 1-week cloning procedure for a single T-DNA vector containing the genes for Cas9 and sgRNAs, as well as the detection of induced mutations in planta. The procedure can likely be adapted for other transformable plant species.
Copyright © 2017 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Arabidopsis thaliana; CRISPR/Cas9; Genome editing; Knockout; Plants

Year:  2017        PMID: 34541122      PMCID: PMC8413554          DOI: 10.21769/BioProtoc.2384

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  26 in total

1.  Mutation detection using Surveyor nuclease.

Authors:  Peter Qiu; Harini Shandilya; James M D'Alessio; Kevin O'Connor; Jeffrey Durocher; Gary F Gerard
Journal:  Biotechniques       Date:  2004-04       Impact factor: 1.993

2.  Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis.

Authors:  Zhengyan Feng; Yanfei Mao; Nanfei Xu; Botao Zhang; Pengliang Wei; Dong-Lei Yang; Zhen Wang; Zhengjing Zhang; Rui Zheng; Lan Yang; Liang Zeng; Xiaodong Liu; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

3.  Genome-wide prediction of highly specific guide RNA spacers for CRISPR-Cas9-mediated genome editing in model plants and major crops.

Authors:  Kabin Xie; Jianwei Zhang; Yinong Yang
Journal:  Mol Plant       Date:  2014-01-30       Impact factor: 13.164

4.  E-CRISP: fast CRISPR target site identification.

Authors:  Florian Heigwer; Grainne Kerr; Michael Boutros
Journal:  Nat Methods       Date:  2014-02       Impact factor: 28.547

Review 5.  CRISPR/Cas9 for plant genome editing: accomplishments, problems and prospects.

Authors:  Joseph W Paul; Yiping Qi
Journal:  Plant Cell Rep       Date:  2016-04-25       Impact factor: 4.570

6.  Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence.

Authors:  Ekaterina Semenova; Matthijs M Jore; Kirill A Datsenko; Anna Semenova; Edze R Westra; Barry Wanner; John van der Oost; Stan J J Brouns; Konstantin Severinov
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

7.  From classical mutagenesis to nuclease-based breeding - directing natural DNA repair for a natural end-product.

Authors:  Michael Pacher; Holger Puchta
Journal:  Plant J       Date:  2017-03-11       Impact factor: 6.417

8.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

9.  The intron of Arabidopsis thaliana polyubiquitin genes is conserved in location and is a quantitative determinant of chimeric gene expression.

Authors:  S R Norris; S E Meyer; J Callis
Journal:  Plant Mol Biol       Date:  1993-03       Impact factor: 4.076

Review 10.  Revolutionizing plant biology: multiple ways of genome engineering by CRISPR/Cas.

Authors:  Simon Schiml; Holger Puchta
Journal:  Plant Methods       Date:  2016-01-28       Impact factor: 4.993

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  1 in total

1.  Oxidative regulation of chloroplast enzymes by thioredoxin and thioredoxin-like proteins in Arabidopsis thaliana.

Authors:  Yuichi Yokochi; Yuka Fukushi; Ken-Ichi Wakabayashi; Keisuke Yoshida; Toru Hisabori
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 11.205

  1 in total

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