Literature DB >> 27114166

CRISPR/Cas9 for plant genome editing: accomplishments, problems and prospects.

Joseph W Paul1, Yiping Qi2.   

Abstract

The increasing burden of the world population on agriculture requires the development of more robust crops. Dissecting the basic biology that underlies plant development and stress responses will inform the design of better crops. One powerful tool for studying plants at the molecular level is the RNA-programmed genome editing system composed of a clustered regularly interspaced short palindromic repeats (CRISPR)-encoded guide RNA and the nuclease Cas9. Here, some of the recent advances in CRISPR/Cas9 technology that have profound implications for improving the study of plant biology are described. These tools are also paving the way towards new horizons for biotechnologies and crop development.

Keywords:  CRISPR; Cas9; Gene targeting; Genome editing; Plant biotechnology; Synthetic biology; Transcriptional regulation

Mesh:

Substances:

Year:  2016        PMID: 27114166     DOI: 10.1007/s00299-016-1985-z

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  89 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Targeted genome modification of crop plants using a CRISPR-Cas system.

Authors:  Qiwei Shan; Yanpeng Wang; Jun Li; Yi Zhang; Kunling Chen; Zhen Liang; Kang Zhang; Jinxing Liu; Jianzhong Jeff Xi; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

3.  DNA replicons for plant genome engineering.

Authors:  Nicholas J Baltes; Javier Gil-Humanes; Tomas Cermak; Paul A Atkins; Daniel F Voytas
Journal:  Plant Cell       Date:  2014-01-17       Impact factor: 11.277

4.  Small molecules enhance CRISPR genome editing in pluripotent stem cells.

Authors:  Chen Yu; Yanxia Liu; Tianhua Ma; Kai Liu; Shaohua Xu; Yu Zhang; Honglei Liu; Marie La Russa; Min Xie; Sheng Ding; Lei S Qi
Journal:  Cell Stem Cell       Date:  2015-02-05       Impact factor: 24.633

5.  Development of germ-line-specific CRISPR-Cas9 systems to improve the production of heritable gene modifications in Arabidopsis.

Authors:  Yanfei Mao; Zhengjing Zhang; Zhengyan Feng; Pengliang Wei; Hui Zhang; José Ramón Botella; Jian-Kang Zhu
Journal:  Plant Biotechnol J       Date:  2015-09-11       Impact factor: 9.803

6.  Establishing a CRISPR-Cas-like immune system conferring DNA virus resistance in plants.

Authors:  Xiang Ji; Huawei Zhang; Yi Zhang; Yanpeng Wang; Caixia Gao
Journal:  Nat Plants       Date:  2015-09-28       Impact factor: 15.793

7.  A Defect in DNA Ligase4 Enhances the Frequency of TALEN-Mediated Targeted Mutagenesis in Rice.

Authors:  Ayako Nishizawa-Yokoi; Tomas Cermak; Tomoki Hoshino; Kazuhiko Sugimoto; Hiroaki Saika; Akiko Mori; Keishi Osakabe; Masao Hamada; Yuichi Katayose; Colby Starker; Daniel F Voytas; Seiichi Toki
Journal:  Plant Physiol       Date:  2015-12-14       Impact factor: 8.340

8.  Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells.

Authors:  Lior Nissim; Samuel D Perli; Alexandra Fridkin; Pablo Perez-Pinera; Timothy K Lu
Journal:  Mol Cell       Date:  2014-05-15       Impact factor: 17.970

9.  Gene regulatory networks in plants: learning causality from time and perturbation.

Authors:  Gabriel Krouk; Jesse Lingeman; Amy Marshall Colon; Gloria Coruzzi; Dennis Shasha
Journal:  Genome Biol       Date:  2013-06-27       Impact factor: 13.583

10.  GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.

Authors:  Shengdar Q Tsai; Zongli Zheng; Nhu T Nguyen; Matthew Liebers; Ved V Topkar; Vishal Thapar; Nicolas Wyvekens; Cyd Khayter; A John Iafrate; Long P Le; Martin J Aryee; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-12-16       Impact factor: 54.908

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  23 in total

1.  Next-generation precision genome engineering and plant biotechnology.

Authors:  Magdy M Mahfouz; Teodoro Cardi; C Neal Stewart
Journal:  Plant Cell Rep       Date:  2016-06-06       Impact factor: 4.570

2.  Fusing T5 exonuclease with Cas9 and Cas12a increases the frequency and size of deletion at target sites.

Authors:  Qianwei Zhang; Kangquan Yin; Guanwen Liu; Shengnan Li; Mengou Li; Jin-Long Qiu
Journal:  Sci China Life Sci       Date:  2020-05-06       Impact factor: 6.038

3.  Genome Editing of Rice by CRISPR-Cas: End-to-End Pipeline for Crop Improvement.

Authors:  Amit Das; Pallavi Ghana; Bhojaraja Rudrappa; Rita Gandhi; Venkata Sresty Tavva; Amitabh Mohanty
Journal:  Methods Mol Biol       Date:  2021

4.  Generation of Targeted Knockout Mutants in Arabidopsis thaliana Using CRISPR/Cas9.

Authors:  Florian Hahn; Marion Eisenhut; Otho Mantegazza; Andreas P M Weber
Journal:  Bio Protoc       Date:  2017-07-05

5.  CRISPR/Cas9 mediated genome editing tools and their possible role in disease resistance mechanism.

Authors:  Diksha Kumari; Bishun Deo Prasad; Padmanabh Dwivedi; Akash Hidangmayum; Sangita Sahni
Journal:  Mol Biol Rep       Date:  2022-09-14       Impact factor: 2.742

6.  Harnessing Effector-Triggered Immunity for Durable Disease Resistance.

Authors:  Meixiang Zhang; Gitta Coaker
Journal:  Phytopathology       Date:  2017-05-30       Impact factor: 4.025

Review 7.  Genetic determinants of micronutrient traits in graminaceous crops to combat hidden hunger.

Authors:  P Sushree Shyamli; Sumi Rana; Sandhya Suranjika; Mehanathan Muthamilarasan; Ajay Parida; Manoj Prasad
Journal:  Theor Appl Genet       Date:  2021-06-06       Impact factor: 5.699

Review 8.  Genome Editing in Sugarcane: Challenges Ahead.

Authors:  Chakravarthi Mohan
Journal:  Front Plant Sci       Date:  2016-10-13       Impact factor: 5.753

9.  Functional Validation of cas9/guideRNA Constructs for Site-Directed Mutagenesis of Triticale ABA8'OH1 loci.

Authors:  Krzysztof Michalski; Christian Hertig; Dariusz R Mańkowski; Jochen Kumlehn; Janusz Zimny; Anna M Linkiewicz
Journal:  Int J Mol Sci       Date:  2021-06-29       Impact factor: 5.923

10.  Improved Transformation and Regeneration of Indica Rice: Disruption of SUB1A as a Test Case via CRISPR-Cas9.

Authors:  Yuya Liang; Sudip Biswas; Backki Kim; Julia Bailey-Serres; Endang M Septiningsih
Journal:  Int J Mol Sci       Date:  2021-06-29       Impact factor: 5.923

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