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Literature DB >> 3453230

A modified Chou and Fasman protein structure algorithm.

Abstract

A FORTRAN program PRSTRC has been developed for protein secondary structure prediction, which is a modified Chou and Fasman (1978) analysis. This implementation carries out a running average of amino acid structure occurrence frequencies, utilizes a simple set of nucleation conditions, and allows user control over nucleation threshold and cutoff parameters. The algorithm includes prediction of the newly defined secondary structure elements: omega loops (1986). It also generates a charge distribution and hydropathy profile. Output includes a simple graphic display for a printer, or a CRT using color addition. Correct structures are predicted for T. dyscritum hemerythrin and the variable domain of mouse immunoglobin k-chain.

Entities: Species

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Year: 1987 PMID： 3453230 DOI： 10.1093/bioinformatics/3.3.211

Source DB: PubMed Journal: Comput Appl Biosci ISSN： 0266-7061

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Cited

13 in total

1. First determination of the secondary structure of purified factor VIII light chain.

Authors: N Bihoreau; M P Fontaine-Aupart; A Lehegarat; M Desmadril; J M Yon
Journal: Biochem J Date: 1992-11-15 Impact factor: 3.857

2. A 7-kDa region of the bacteriophage T7 gene 4 protein is required for primase but not for helicase activity.

Authors: J A Bernstein; C C Richardson
Journal: Proc Natl Acad Sci U S A Date: 1988-01 Impact factor: 11.205

3. The S2 gene nucleotide sequences of prototype strains of the three reovirus serotypes: characterization of reovirus core protein sigma 2.

Authors: T S Dermody; L A Schiff; M L Nibert; K M Coombs; B N Fields
Journal: J Virol Date: 1991-11 Impact factor: 5.103

4. Molecular cloning of the common acute lymphoblastic leukemia antigen (CALLA) identifies a type II integral membrane protein.

Authors: M A Shipp; N E Richardson; P H Sayre; N R Brown; E L Masteller; L K Clayton; J Ritz; E L Reinherz
Journal: Proc Natl Acad Sci U S A Date: 1988-07 Impact factor: 11.205

A modified Chou and Fasman protein structure algorithm.

1. First determination of the secondary structure of purified factor VIII light chain.

2. A 7-kDa region of the bacteriophage T7 gene 4 protein is required for primase but not for helicase activity.

3. The S2 gene nucleotide sequences of prototype strains of the three reovirus serotypes: characterization of reovirus core protein sigma 2.

4. Molecular cloning of the common acute lymphoblastic leukemia antigen (CALLA) identifies a type II integral membrane protein.

5. Characterization of a T-lymphocyte Epstein-Barr virus/C3d receptor (CD21).

6. Cloning and expression of a cDNA for the T-cell-activating protein TAP.

7. Prediction of similar transforming regions in simian virus 40 large T, adenovirus E1A, and myc oncoproteins.

Review 8. ABC transporters: bacterial exporters.

9. Identification of three related human GRO genes encoding cytokine functions.

10. Analysis of sequence requirements for protein tyrosine sulfation.