Literature DB >> 34531263

A Guide to ComBat Harmonization of Imaging Biomarkers in Multicenter Studies.

Fanny Orlhac1, Jakoba J Eertink2, Anne-Ségolène Cottereau3,4, Josée M Zijlstra2, Catherine Thieblemont5,6, Michel Meignan7, Ronald Boellaard8, Irène Buvat3.   

Abstract

The impact of PET image acquisition and reconstruction parameters on SUV measurements or radiomic feature values is widely documented. This scanner effect is detrimental to the design and validation of predictive or prognostic models and limits the use of large multicenter cohorts. To reduce the impact of this scanner effect, the ComBat method has been proposed and is now used in various contexts. The purpose of this article is to explain and illustrate the use of ComBat based on practical examples. We also give examples in which the ComBat assumptions are not met and, thus, in which ComBat should not be used.
© 2022 by the Society of Nuclear Medicine and Molecular Imaging.

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Keywords:  harmonization; multicenter studies; radiomics; texture analysis

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Year:  2021        PMID： 34531263      PMCID： PMC8805779          DOI： 10.2967/jnumed.121.262464

Source DB:  PubMed          Journal:  J Nucl Med        ISSN： 0161-5505            Impact factor:   10.057


  28 in total

1.  Impact of Image Reconstruction Settings on Texture Features in 18F-FDG PET.

Authors:  Jianhua Yan; Jason Lim Chu-Shern; Hoi Yin Loi; Lih Kin Khor; Arvind K Sinha; Swee Tian Quek; Ivan W K Tham; David Townsend
Journal:  J Nucl Med       Date:  2015-07-30       Impact factor: 10.057

2.  Adjusting batch effects in microarray expression data using empirical Bayes methods.

Authors:  W Evan Johnson; Cheng Li; Ariel Rabinovic
Journal:  Biostatistics       Date:  2006-04-21       Impact factor: 5.899

3.  The impact of image reconstruction settings on 18F-FDG PET radiomic features: multi-scanner phantom and patient studies.

Authors:  Isaac Shiri; Arman Rahmim; Pardis Ghaffarian; Parham Geramifar; Hamid Abdollahi; Ahmad Bitarafan-Rajabi
Journal:  Eur Radiol       Date:  2017-05-31       Impact factor: 5.315

Review 4.  Radiomics for precision medicine: Current challenges, future prospects, and the proposal of a new framework.

Authors:  A Ibrahim; S Primakov; M Beuque; H C Woodruff; I Halilaj; G Wu; T Refaee; R Granzier; Y Widaatalla; R Hustinx; F M Mottaghy; P Lambin
Journal:  Methods       Date:  2020-06-03       Impact factor: 3.608

5.  Baseline Total Metabolic Tumor Volume Measured with Fixed or Different Adaptive Thresholding Methods Equally Predicts Outcome in Peripheral T Cell Lymphoma.

Authors:  Anne-Ségolène Cottereau; Sebastien Hapdey; Loic Chartier; Romain Modzelewski; Olivier Casasnovas; Emmanuel Itti; Herve Tilly; Pierre Vera; Michel A Meignan; Stéphanie Becker
Journal:  J Nucl Med       Date:  2016-10-06       Impact factor: 10.057

6.  Harmonization of cortical thickness measurements across scanners and sites.

Authors:  Jean-Philippe Fortin; Nicholas Cullen; Yvette I Sheline; Warren D Taylor; Irem Aselcioglu; Philip A Cook; Phil Adams; Crystal Cooper; Maurizio Fava; Patrick J McGrath; Melvin McInnis; Mary L Phillips; Madhukar H Trivedi; Myrna M Weissman; Russell T Shinohara
Journal:  Neuroimage       Date:  2017-11-17       Impact factor: 6.556

7.  ComBat harmonization for radiomic features in independent phantom and lung cancer patient computed tomography datasets.

Authors:  R N Mahon; M Ghita; G D Hugo; E Weiss
Journal:  Phys Med Biol       Date:  2020-01-13       Impact factor: 3.609

8.  The Effects of In-Plane Spatial Resolution on CT-Based Radiomic Features' Stability with and without ComBat Harmonization.

Authors:  Abdalla Ibrahim; Turkey Refaee; Sergey Primakov; Bruno Barufaldi; Raymond J Acciavatti; Renée W Y Granzier; Roland Hustinx; Felix M Mottaghy; Henry C Woodruff; Joachim E Wildberger; Philippe Lambin; Andrew D A Maidment
Journal:  Cancers (Basel)       Date:  2021-04-13       Impact factor: 6.639

9.  Comment on Ibrahim et al. The Effects of In-Plane Spatial Resolution on CT-Based Radiomic Features' Stability with and without ComBat Harmonization. Cancers 2021, 13, 1848.

Authors:  Fanny Orlhac; Irène Buvat
Journal:  Cancers (Basel)       Date:  2021-06-18       Impact factor: 6.639

10.  Inter-site harmonization based on dual generative adversarial networks for diffusion tensor imaging: application to neonatal white matter development.

Authors:  Jie Zhong; Ying Wang; Jie Li; Xuetong Xue; Simin Liu; Miaomiao Wang; Xinbo Gao; Quan Wang; Jian Yang; Xianjun Li
Journal:  Biomed Eng Online       Date:  2020-01-15       Impact factor: 2.819
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  7 in total

1.  β-amyloid PET harmonisation across longitudinal studies: Application to AIBL, ADNI and OASIS3.

Authors:  Pierrick Bourgeat; Vincent Doré; Samantha C Burnham; Tammie Benzinger; Duygu Tosun; Shenpeng Li; Manu Goyal; Pamela LaMontagne; Liang Jin; Christopher C Rowe; Michael W Weiner; John C Morris; Colin L Masters; Jurgen Fripp; Victor L Villemagne
Journal:  Neuroimage       Date:  2022-07-30       Impact factor: 7.400

2.  Impact of Multidomain Lifestyle Intervention on Cerebral Cortical Thickness and Serum Brain-Derived Neurotrophic Factor: the SUPERBRAIN Exploratory Sub-study.

Authors:  So Young Moon; Sohui Kim; Seong Hye Choi; Chang Hyung Hong; Yoo Kyoung Park; Hae Ri Na; Hong-Sun Song; Hee Kyung Park; Muncheong Choi; Sun Min Lee; Buong-O Chun; Jong-Min Lee; Jee Hyang Jeong
Journal:  Neurotherapeutics       Date:  2022-08-01       Impact factor: 6.088

Review 3.  Radiomic Signatures Associated with CD8+ Tumour-Infiltrating Lymphocytes: A Systematic Review and Quality Assessment Study.

Authors:  Syafiq Ramlee; David Hulse; Kinga Bernatowicz; Raquel Pérez-López; Evis Sala; Luigi Aloj
Journal:  Cancers (Basel)       Date:  2022-07-27       Impact factor: 6.575

4.  Healthy Organs Uptake on Baseline 18F-FDG PET/CT as an Alternative to Total Metabolic Tumor Volume to Predict Event-Free Survival in Classical Hodgkin's Lymphoma.

Authors:  David Morland; Elizabeth Katherine Anna Triumbari; Elena Maiolo; Annarosa Cuccaro; Giorgio Treglia; Stefan Hohaus; Salvatore Annunziata
Journal:  Front Med (Lausanne)       Date:  2022-06-22

5.  Context-Aware Saliency Guided Radiomics: Application to Prediction of Outcome and HPV-Status from Multi-Center PET/CT Images of Head and Neck Cancer.

Authors:  Wenbing Lv; Hui Xu; Xu Han; Hao Zhang; Jianhua Ma; Arman Rahmim; Lijun Lu
Journal:  Cancers (Basel)       Date:  2022-03-25       Impact factor: 6.639

6.  Radiomics-Based Method for Predicting the Glioma Subtype as Defined by Tumor Grade, IDH Mutation, and 1p/19q Codeletion.

Authors:  Yingping Li; Samy Ammari; Littisha Lawrance; Arnaud Quillent; Tarek Assi; Nathalie Lassau; Emilie Chouzenoux
Journal:  Cancers (Basel)       Date:  2022-03-31       Impact factor: 6.639

7.  Combatting the effect of image reconstruction settings on lymphoma [18F]FDG PET metabolic tumor volume assessment using various segmentation methods.

Authors:  Maria C Ferrández; Jakoba J Eertink; Sandeep S V Golla; Sanne E Wiegers; Gerben J C Zwezerijnen; Simone Pieplenbosch; Josée M Zijlstra; Ronald Boellaard
Journal:  EJNMMI Res       Date:  2022-07-29       Impact factor: 3.434
  7 in total

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