Literature DB >> 34529321

The evolution of the antimicrobial peptide database over 18 years: Milestones and new features.

Guangshun Wang1, C Michael Zietz2, Ashok Mudgapalli2, Shuona Wang1, Zhe Wang1.   

Abstract

The antimicrobial peptide database (APD) has served the antimicrobial peptide field for 18 years. Because it is widely used in research and education, this article documents database milestones and key events that have transformed it into the current form. A comparison is made for the APD peptide statistics between 2010 and 2020, validating the major database findings to date. We also describe new additions ranging from peptide entries to search functions. Of note, the APD also contains antimicrobial peptides from host microbiota, which are important in shaping immune systems and could be linked to a variety of human diseases. Finally, the database has been re-programmed to the web branding and latest security compliance of the University of Nebraska Medical Center. The reprogrammed APD can be accessed at https://aps.unmc.edu.
© 2021 The Protein Society.

Entities:  

Keywords:  APD; antimicrobial peptides; database; microbiota; peptide design; peptide prediction

Mesh:

Substances:

Year:  2021        PMID: 34529321      PMCID: PMC8740828          DOI: 10.1002/pro.4185

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  76 in total

1.  ANTIMIC: a database of antimicrobial sequences.

Authors:  M Brahmachary; S P T Krishnan; J L Y Koh; A M Khan; S H Seah; T W Tan; V Brusic; V B Bajic
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 2.  Mode of action of membrane active antimicrobial peptides.

Authors:  Yechiel Shai
Journal:  Biopolymers       Date:  2002       Impact factor: 2.505

3.  The antimicrobial peptide database provides a platform for decoding the design principles of naturally occurring antimicrobial peptides.

Authors:  Guangshun Wang
Journal:  Protein Sci       Date:  2019-08-10       Impact factor: 6.725

Review 4.  Membrane Permeabilization Mechanisms.

Authors:  Katsumi Matsuzaki
Journal:  Adv Exp Med Biol       Date:  2019       Impact factor: 2.622

Review 5.  Host defense antimicrobial peptides as antibiotics: design and application strategies.

Authors:  Biswajit Mishra; Scott Reiling; D Zarena; Guangshun Wang
Journal:  Curr Opin Chem Biol       Date:  2017-04-08       Impact factor: 8.822

6.  Histatins, a novel family of histidine-rich proteins in human parotid secretion. Isolation, characterization, primary structure, and fungistatic effects on Candida albicans.

Authors:  F G Oppenheim; T Xu; F M McMillian; S M Levitz; R D Diamond; G D Offner; R F Troxler
Journal:  J Biol Chem       Date:  1988-06-05       Impact factor: 5.157

7.  Dissolvable Microneedles Coupled with Nanofiber Dressings Eradicate Biofilms via Effectively Delivering a Database-Designed Antimicrobial Peptide.

Authors:  Yajuan Su; Valerio Luca Mainardi; Hongjun Wang; Alec McCarthy; Yu Shrike Zhang; Shixuan Chen; Johnson V John; Shannon L Wong; Ronald R Hollins; Guangshun Wang; Jingwei Xie
Journal:  ACS Nano       Date:  2020-08-27       Impact factor: 15.881

8.  Apidaecins: antibacterial peptides from honeybees.

Authors:  P Casteels; C Ampe; F Jacobs; M Vaeck; P Tempst
Journal:  EMBO J       Date:  1989-08       Impact factor: 11.598

Review 9.  Intestinal Microbiota-A Promising Target for Antiviral Therapy?

Authors:  Mengling Yang; Yang Yang; Qingnan He; Ping Zhu; Mengqi Liu; Jiahao Xu; Mingyi Zhao
Journal:  Front Immunol       Date:  2021-05-12       Impact factor: 7.561

10.  Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.

Authors:  Matthieu G Gagnon; Raktim N Roy; Ivan B Lomakin; Tanja Florin; Alexander S Mankin; Thomas A Steitz
Journal:  Nucleic Acids Res       Date:  2016-01-24       Impact factor: 16.971

View more
  4 in total

Review 1.  The evolution of the antimicrobial peptide database over 18 years: Milestones and new features.

Authors:  Guangshun Wang; C Michael Zietz; Ashok Mudgapalli; Shuona Wang; Zhe Wang
Journal:  Protein Sci       Date:  2021-09-24       Impact factor: 6.725

2.  Multiple Antimicrobial Effects of Hybrid Peptides Synthesized Based on the Sequence of Ribosomal S1 Protein from Staphylococcus aureus.

Authors:  Sergey V Kravchenko; Pavel A Domnin; Sergei Y Grishin; Alexander V Panfilov; Viacheslav N Azev; Leila G Mustaeva; Elena Y Gorbunova; Margarita I Kobyakova; Alexey K Surin; Anna V Glyakina; Roman S Fadeev; Svetlana A Ermolaeva; Oxana V Galzitskaya
Journal:  Int J Mol Sci       Date:  2022-01-04       Impact factor: 5.923

Review 3.  Realistic and critical review of the state of systemic antimicrobial peptides.

Authors:  Guangshun Wang; Abraham Fikru Mechesso
Journal:  ADMET DMPK       Date:  2022-01-20

4.  Structure and Activity of a Selective Antibiofilm Peptide SK-24 Derived from the NMR Structure of Human Cathelicidin LL-37.

Authors:  Yingxia Zhang; Jayaram Lakshmaiah Narayana; Qianhui Wu; Xiangli Dang; Guangshun Wang
Journal:  Pharmaceuticals (Basel)       Date:  2021-11-30
  4 in total

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