Literature DB >> 34526718

Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks.

Alpha Kabinet Keita1,2, Fara R Koundouno3,4, Martin Faye5, Ariane Düx6, Julia Hinzmann4,7,8, Haby Diallo9, Ahidjo Ayouba10, Frederic Le Marcis9,10,11, Barré Soropogui3, Kékoura Ifono3,4, Moussa M Diagne5, Mamadou S Sow9,12, Joseph A Bore3,13, Sebastien Calvignac-Spencer6, Nicole Vidal10, Jacob Camara3, Mamadou B Keita14, Annick Renevey4,7, Amadou Diallo5, Abdoul K Soumah9, Saa L Millimono3,4, Almudena Mari-Saez6, Mamadou Diop5, Ahmadou Doré3, Fodé Y Soumah12, Kaka Kourouma14, Nathalie J Vielle4,15, Cheikh Loucoubar5, Ibrahima Camara9, Karifa Kourouma3,4, Giuditta Annibaldis4,15, Assaïtou Bah3, Anke Thielebein4,7, Meike Pahlmann4,7, Steven T Pullan8,13, Miles W Carroll8,13, Joshua Quick16, Pierre Formenty17, Anais Legand17, Karla Pietro18, Michael R Wiley18,19, Noel Tordo20, Christophe Peyrefitte5, John T McCrone21, Andrew Rambaut21, Youssouf Sidibé22, Mamadou D Barry22, Madeleine Kourouma22, Cé D Saouromou22, Mamadou Condé22, Moussa Baldé12, Moriba Povogui9, Sakoba Keita23, Mandiou Diakite24,25, Mamadou S Bah24, Amadou Sidibe11, Dembo Diakite12, Fodé B Sako12, Fodé A Traore12, Georges A Ki-Zerbo15, Philippe Lemey26, Stephan Günther4,7,15, Liana E Kafetzopoulou4,7,26, Amadou A Sall5, Eric Delaporte10,27, Sophie Duraffour4,7,15, Ousmane Faye5, Fabian H Leendertz6, Martine Peeters10, Abdoulaye Toure9,14, N' Faly Magassouba3.   

Abstract

Seven years after the declaration of the first epidemic of Ebola virus disease in Guinea, the country faced a new outbreak-between 14 February and 19 June 2021-near the epicentre of the previous epidemic1,2. Here we use next-generation sequencing to generate complete or near-complete genomes of Zaire ebolavirus from samples obtained from 12 different patients. These genomes form a well-supported phylogenetic cluster with genomes from the previous outbreak, which indicates that the new outbreak was not the result of a new spillover event from an animal reservoir. The 2021 lineage shows considerably lower divergence than would be expected during sustained human-to-human transmission, which suggests a persistent infection with reduced replication or a period of latency. The resurgence of Zaire ebolavirus from humans five years after the end of the previous outbreak of Ebola virus disease reinforces the need for long-term medical and social care for patients who survive the disease, to reduce the risk of re-emergence and to prevent further stigmatization.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34526718     DOI: 10.1038/s41586-021-03901-9

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  48 in total

1.  Emergence of Zaire Ebola virus disease in Guinea.

Authors:  Sylvain Baize; Delphine Pannetier; Lisa Oestereich; Toni Rieger; Lamine Koivogui; N'Faly Magassouba; Barrè Soropogui; Mamadou Saliou Sow; Sakoba Keïta; Hilde De Clerck; Amanda Tiffany; Gemma Dominguez; Mathieu Loua; Alexis Traoré; Moussa Kolié; Emmanuel Roland Malano; Emmanuel Heleze; Anne Bocquin; Stephane Mély; Hervé Raoul; Valérie Caro; Dániel Cadar; Martin Gabriel; Meike Pahlmann; Dennis Tappe; Jonas Schmidt-Chanasit; Benido Impouma; Abdoul Karim Diallo; Pierre Formenty; Michel Van Herp; Stephan Günther
Journal:  N Engl J Med       Date:  2014-04-16       Impact factor: 91.245

Review 2.  Ebola virus disease.

Authors:  Denis Malvy; Anita K McElroy; Hilde de Clerck; Stephan Günther; Johan van Griensven
Journal:  Lancet       Date:  2019-02-15       Impact factor: 79.321

3.  2018 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation.

Authors:  Placide Mbala-Kingebeni; Catherine B Pratt; Michael R Wiley; Moussa M Diagne; Sheila Makiala-Mandanda; Amuri Aziza; Nicholas Di Paola; Joseph A Chitty; Mamadou Diop; Ahidjo Ayouba; Nicole Vidal; Ousmane Faye; Oumar Faye; Stormy Karhemere; Aaron Aruna; Justus Nsio; Felix Mulangu; Daniel Mukadi; Patrick Mukadi; John Kombe; Anastasie Mulumba; Sophie Duraffour; Jacques Likofata; Elisabeth Pukuta; Katie Caviness; Maggie L Bartlett; Jeanette Gonzalez; Timothy Minogue; Shanmuga Sozhamannan; Stephen M Gross; Gary P Schroth; Jens H Kuhn; Eric F Donaldson; Eric Delaporte; Mariano Sanchez-Lockhart; Martine Peeters; Jean-Jacques Muyembe-Tamfum; Amadou Alpha Sall; Gustavo Palacios; Steve Ahuka-Mundeke
Journal:  Lancet Infect Dis       Date:  2019-04-15       Impact factor: 25.071

4.  Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic.

Authors:  William E Diehl; Aaron E Lin; Nathan D Grubaugh; Luiz Max Carvalho; Kyusik Kim; Pyae Phyo Kyawe; Sean M McCauley; Elisa Donnard; Alper Kucukural; Patrick McDonel; Stephen F Schaffner; Manuel Garber; Andrew Rambaut; Kristian G Andersen; Pardis C Sabeti; Jeremy Luban
Journal:  Cell       Date:  2016-11-03       Impact factor: 41.582

5.  A 40-Month Follow-Up of Ebola Virus Disease Survivors in Guinea (PostEbogui) Reveals Long-Term Detection of Ebola Viral Ribonucleic Acid in Semen and Breast Milk.

Authors:  Alpha Kabinet Keita; Nicole Vidal; Abdoulaye Toure; Mamadou Saliou Kalifa Diallo; N'fally Magassouba; Sylvain Baize; Mathieu Mateo; Herve Raoul; Stephane Mely; Fabien Subtil; Cécé Kpamou; Lamine Koivogui; Falaye Traore; Mamadou Saliou Sow; Ahidjo Ayouba; Jean Francois Etard; Eric Delaporte; Martine Peeters
Journal:  Open Forum Infect Dis       Date:  2019-11-08       Impact factor: 3.835

6.  Mapping the zoonotic niche of Ebola virus disease in Africa.

Authors:  David M Pigott; Nick Golding; Adrian Mylne; Zhi Huang; Andrew J Henry; Daniel J Weiss; Oliver J Brady; Moritz U G Kraemer; David L Smith; Catherine L Moyes; Samir Bhatt; Peter W Gething; Peter W Horby; Isaac I Bogoch; John S Brownstein; Sumiko R Mekaru; Andrew J Tatem; Kamran Khan; Simon I Hay
Journal:  Elife       Date:  2014-09-08       Impact factor: 8.140

7.  Resurgence of Ebola Virus Disease in Guinea Linked to a Survivor With Virus Persistence in Seminal Fluid for More Than 500 Days.

Authors:  Boubacar Diallo; Daouda Sissoko; Nicholas J Loman; Hadja Aïssatou Bah; Hawa Bah; Mary Claire Worrell; Lya Saidou Conde; Ramata Sacko; Samuel Mesfin; Angelo Loua; Jacques Katomba Kalonda; Ngozi A Erondu; Benjamin A Dahl; Susann Handrick; Ian Goodfellow; Luke W Meredith; Matthew Cotten; Umaru Jah; Raoul Emeric Guetiya Wadoum; Pierre Rollin; N'Faly Magassouba; Denis Malvy; Xavier Anglaret; Miles W Carroll; Raymond Bruce Aylward; Mamoudou Harouna Djingarey; Abdoulaye Diarra; Pierre Formenty; Sakoba Keïta; Stephan Günther; Andrew Rambaut; Sophie Duraffour
Journal:  Clin Infect Dis       Date:  2016-09-01       Impact factor: 9.079

8.  Ebola Virus Persistence in Breast Milk After No Reported Illness: A Likely Source of Virus Transmission From Mother to Child.

Authors:  Daouda Sissoko; Mory Keïta; Boubacar Diallo; Negar Aliabadi; David L Fitter; Benjamin A Dahl; Joseph Akoi Bore; Fara Raymond Koundouno; Katrin Singethan; Sarah Meisel; Theresa Enkirch; Antonio Mazzarelli; Victoria Amburgey; Ousmane Faye; Amadou Alpha Sall; N'Faly Magassouba; Miles W Carroll; Xavier Anglaret; Denis Malvy; Pierre Formenty; Raymond Bruce Aylward; Sakoba Keïta; Mamoudou Harouna Djingarey; Nicholas J Loman; Stephan Günther; Sophie Duraffour
Journal:  Clin Infect Dis       Date:  2017-02-15       Impact factor: 9.079

9.  Rapid Confirmation of the Zaire Ebola Virus in the Outbreak of the Equateur Province in the Democratic Republic of Congo: Implications for Public Health Interventions.

Authors:  Placide Mbala-Kingebeni; Christian-Julian Villabona-Arenas; Nicole Vidal; Jacques Likofata; Justus Nsio-Mbeta; Sheila Makiala-Mandanda; Daniel Mukadi; Patrick Mukadi; Charles Kumakamba; Bathe Djokolo; Ahidjo Ayouba; Eric Delaporte; Martine Peeters; Jean-Jacques Muyembe Tamfum; Steve Ahuka-Mundeke
Journal:  Clin Infect Dis       Date:  2019-01-07       Impact factor: 9.079

10.  Real-time, portable genome sequencing for Ebola surveillance.

Authors:  Joshua Quick; Nicholas J Loman; Sophie Duraffour; Jared T Simpson; Ettore Severi; Lauren Cowley; Joseph Akoi Bore; Raymond Koundouno; Gytis Dudas; Amy Mikhail; Nobila Ouédraogo; Babak Afrough; Amadou Bah; Jonathan Hj Baum; Beate Becker-Ziaja; Jan-Peter Boettcher; Mar Cabeza-Cabrerizo; Alvaro Camino-Sanchez; Lisa L Carter; Juiliane Doerrbecker; Theresa Enkirch; Isabel Graciela García Dorival; Nicole Hetzelt; Julia Hinzmann; Tobias Holm; Liana Eleni Kafetzopoulou; Michel Koropogui; Abigail Kosgey; Eeva Kuisma; Christopher H Logue; Antonio Mazzarelli; Sarah Meisel; Marc Mertens; Janine Michel; Didier Ngabo; Katja Nitzsche; Elisa Pallash; Livia Victoria Patrono; Jasmine Portmann; Johanna Gabriella Repits; Natasha Yasmin Rickett; Andrea Sachse; Katrin Singethan; Inês Vitoriano; Rahel L Yemanaberhan; Elsa G Zekeng; Racine Trina; Alexander Bello; Amadou Alpha Sall; Ousmane Faye; Oumar Faye; N'Faly Magassouba; Cecelia V Williams; Victoria Amburgey; Linda Winona; Emily Davis; Jon Gerlach; Franck Washington; Vanessa Monteil; Marine Jourdain; Marion Bererd; Alimou Camara; Hermann Somlare; Abdoulaye Camara; Marianne Gerard; Guillaume Bado; Bernard Baillet; Déborah Delaune; Koumpingnin Yacouba Nebie; Abdoulaye Diarra; Yacouba Savane; Raymond Bernard Pallawo; Giovanna Jaramillo Gutierrez; Natacha Milhano; Isabelle Roger; Christopher J Williams; Facinet Yattara; Kuiama Lewandowski; Jamie Taylor; Philip Rachwal; Daniel Turner; Georgios Pollakis; Julian A Hiscox; David A Matthews; Matthew K O'Shea; Andrew McD Johnston; Duncan Wilson; Emma Hutley; Erasmus Smit; Antonino Di Caro; Roman Woelfel; Kilian Stoecker; Erna Fleischmann; Martin Gabriel; Simon A Weller; Lamine Koivogui; Boubacar Diallo; Sakoba Keita; Andrew Rambaut; Pierre Formenty; Stephan Gunther; Miles W Carroll
Journal:  Nature       Date:  2016-02-03       Impact factor: 69.504

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  24 in total

1.  Expanded Histopathology and Tropism of Ebola Virus in the Rhesus Macaque Model: Potential for Sexual Transmission, Altered Adrenomedullary Hormone Production, and Early Viral Replication in Liver.

Authors:  David X Liu; Timothy K Cooper; Donna L Perry; Louis M Huzella; Amanda M W Hischak; Randy J Hart; Nejra Isic; Russell Byrum; Danny Ragland; Marisa St Claire; Kurt Cooper; Rebecca Reeder; James Logue; Peter B Jahrling; Michael R Holbrook; Richard S Bennett; Lisa E Hensley
Journal:  Am J Pathol       Date:  2021-10-06       Impact factor: 4.307

Review 2.  Melatonin: Regulation of Viral Phase Separation and Epitranscriptomics in Post-Acute Sequelae of COVID-19.

Authors:  Doris Loh; Russel J Reiter
Journal:  Int J Mol Sci       Date:  2022-07-23       Impact factor: 6.208

3.  Ebola outbreak in Uganda: how worried are researchers?

Authors:  Max Kozlov
Journal:  Nature       Date:  2022-10-07       Impact factor: 69.504

Review 4.  Unexplained post-acute infection syndromes.

Authors:  Jan Choutka; Viraj Jansari; Mady Hornig; Akiko Iwasaki
Journal:  Nat Med       Date:  2022-05-18       Impact factor: 87.241

5.  Nucleotide Sequence Sharing between the Human Genome and Primers for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Detection.

Authors:  Darja Kanduc
Journal:  Glob Med Genet       Date:  2022-06-13

6.  Genomic epidemiological models describe pathogen evolution across fitness valleys.

Authors:  Pablo Cárdenas; Vladimir Corredor; Mauricio Santos-Vega
Journal:  Sci Adv       Date:  2022-07-13       Impact factor: 14.957

7.  Added Value of an Anti-Ebola Serology for the Management of Clinically Suspected Ebola Virus Disease Patients Discharged as Negative in an Epidemic Context.

Authors:  Antoine Nkuba-Ndaye; Daniel Mukadi-Bamuleka; Junior Bulabula-Penge; Guillaume Thaurignac; François Edidi-Atani; Fabrice Mambu-Mbika; Bernice Danga-Yema; Meris Matondo-Kuamfumu; Eddy Kinganda-Lusamaki; Nella Bisento; Raphaël Lumembe-Numbi; Gabriel Kabamba-Lungenyi; Divine Kitsa-Mutsumbirwa; Nelson Kambale-Sivihwa; François Boillot; Eric Delaporte; Placide Mbala-Kingebeni; Ahidjo Ayouba; Martine Peeters; Steve Ahuka-Mundeke
Journal:  J Infect Dis       Date:  2022-08-24       Impact factor: 7.759

8.  Dynamics of spike-and nucleocapsid specific immunity during long-term follow-up and vaccination of SARS-CoV-2 convalescents.

Authors:  Nina Koerber; Alina Priller; Sarah Yazici; Tanja Bauer; Ulrike Protzer; Percy A Knolle; Cho-Chin Cheng; Hrvoje Mijočević; Hannah Wintersteller; Samuel Jeske; Emanuel Vogel; Martin Feuerherd; Kathrin Tinnefeld; Christof Winter; Jürgen Ruland; Markus Gerhard; Bernhard Haller; Catharina Christa; Otto Zelger; Hedwig Roggendorf; Martin Halle; Johanna Erber; Paul Lingor; Oliver Keppler; Dietmar Zehn
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 14.919

9.  Tolerance and Persistence of Ebola Virus in Primary Cells from Mops condylurus, a Potential Ebola Virus Reservoir.

Authors:  Marcel Bokelmann; Uwe Vogel; Franka Debeljak; Ariane Düx; Silke Riesle-Sbarbaro; Angelika Lander; Annette Wahlbrink; Nicole Kromarek; Stuart Neil; Emmanuel Couacy-Hymann; Joseph Prescott; Andreas Kurth
Journal:  Viruses       Date:  2021-10-29       Impact factor: 5.048

10.  There is no "origin" to SARS-CoV-2.

Authors:  Roger Frutos; Olivier Pliez; Laurent Gavotte; Christian A Devaux
Journal:  Environ Res       Date:  2021-10-06       Impact factor: 6.498

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