Literature DB >> 34524892

Distinct Assembly Processes and Determinants of Soil Microbial Communities between Farmland and Grassland in Arid and Semiarid Areas.

Aiai Xu1,2, Jie Liu1,2, Zhiying Guo1,2, Changkun Wang1,2, Kai Pan1,2, Fangfang Zhang1,2, Xianzhang Pan1,2.   

Abstract

It is critical to identify the assembly processes and determinants of soil microbial communities to better predict soil microbial responses to environmental change in arid and semiarid areas. Here, soils from 16 grassland-only, 9 paired grassland and farmland, and 16 farmland-only sites were collected across the central Inner Mongolia Plateau, covering a steep environmental gradient. Through analyzing the paired samples, we discovered that land uses had strong effects on soil microbial communities but weak effects on their assembly processes. For all samples, although no environmental variables were significantly correlated with the net relatedness index (NRI), both the nearest taxon index (NTI) and the β-nearest taxon index (βNTI) were most related to mean annual precipitation (MAP). With the increase of MAP, soil microbial taxa at the tips of the phylogenetic tree were more clustered, and the contribution of determinism increased. Determinism (48.6%), especially variable selection (46.3%), and stochasticity (51.4%) were almost equal in farmland, while stochasticity (75.0%) was dominant in grassland. Additionally, Mantel tests and redundancy analyses (RDA) revealed that the main determinants of soil microbial community structure were MAP in grassland but mean annual temperature (MAT) in farmland. MAP and MAT were also good predictors of the community composition (the top 200 dominant operational taxonomic units) in grassland and farmland, respectively. Collectively, in arid and semiarid areas, soil microbial communities were more sensitive to environmental change in farmland than in grassland, and unlike the major impact of MAP on grassland microbial communities, MAT was the primary driver of farmland microbial communities. IMPORTANCE As one of the most diverse organisms, soil microbes play indispensable roles in many ecological processes in arid and semiarid areas with limited macrofaunal and plant diversity, yet the mechanisms underpinning soil microbial community are not fully understood. In this study, soil microbial communities were investigated along a 500-km transect covering a steep environmental gradient across farmland and grassland in the areas. The results showed that precipitation was the main factor mediating the assembly processes. Determinism was more influential in farmland, and variable selection of farmland was twice that of grassland. Temperature mainly drove farmland microbial communities, while precipitation mainly affected grassland microbial communities. These findings provide new information about the assembly processes and determinants of soil microbial communities in arid and semiarid areas, consequently improving the predictability of the community dynamics, which have implications for sustaining soil microbial diversity and ecosystem functioning, particularly under global climate change conditions.

Entities:  

Keywords:  arid; community assembly; determinant; farmland; grassland; semiarid; soil microbial community

Mesh:

Year:  2021        PMID: 34524892      PMCID: PMC8552903          DOI: 10.1128/AEM.01010-21

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  43 in total

1.  Picante: R tools for integrating phylogenies and ecology.

Authors:  Steven W Kembel; Peter D Cowan; Matthew R Helmus; William K Cornwell; Helene Morlon; David D Ackerly; Simon P Blomberg; Campbell O Webb
Journal:  Bioinformatics       Date:  2010-04-15       Impact factor: 6.937

2.  Responses of soil bacterial and fungal communities to extreme desiccation and rewetting.

Authors:  Romain L Barnard; Catherine A Osborne; Mary K Firestone
Journal:  ISME J       Date:  2013-07-04       Impact factor: 10.302

3.  UPARSE: highly accurate OTU sequences from microbial amplicon reads.

Authors:  Robert C Edgar
Journal:  Nat Methods       Date:  2013-08-18       Impact factor: 28.547

Review 4.  Patterns and processes of microbial community assembly.

Authors:  Diana R Nemergut; Steven K Schmidt; Tadashi Fukami; Sean P O'Neill; Teresa M Bilinski; Lee F Stanish; Joseph E Knelman; John L Darcy; Ryan C Lynch; Phillip Wickey; Scott Ferrenberg
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

5.  FLASH: fast length adjustment of short reads to improve genome assemblies.

Authors:  Tanja Magoč; Steven L Salzberg
Journal:  Bioinformatics       Date:  2011-09-07       Impact factor: 6.937

6.  Impact of land-use change and soil organic carbon quality on microbial diversity in soils across Europe.

Authors:  Márton Szoboszlay; Anja B Dohrmann; Christopher Poeplau; Axel Don; Christoph C Tebbe
Journal:  FEMS Microbiol Ecol       Date:  2017-12-01       Impact factor: 4.194

7.  Soil microbial diversity drops with land-use change in a high mountain temperate forest: a metagenomics survey.

Authors:  Ligia C Muñoz-Arenas; Carmine Fusaro; Mario Hernández-Guzmán; Luc Dendooven; Arturo Estrada-Torres; Yendi E Navarro-Noya
Journal:  Environ Microbiol Rep       Date:  2020-02-13       Impact factor: 3.541

8.  Significant Impacts of Increasing Aridity on the Arid Soil Microbiome.

Authors:  Julia W Neilson; Katy Califf; Cesar Cardona; Audrey Copeland; Will van Treuren; Karen L Josephson; Rob Knight; Jack A Gilbert; Jay Quade; J Gregory Caporaso; Raina M Maier
Journal:  mSystems       Date:  2017-05-30       Impact factor: 6.496

9.  Soil pH mediates the balance between stochastic and deterministic assembly of bacteria.

Authors:  Binu M Tripathi; James C Stegen; Mincheol Kim; Ke Dong; Jonathan M Adams; Yoo Kyung Lee
Journal:  ISME J       Date:  2018-03-07       Impact factor: 10.302

10.  Temperature mediates continental-scale diversity of microbes in forest soils.

Authors:  Jizhong Zhou; Ye Deng; Lina Shen; Chongqing Wen; Qingyun Yan; Daliang Ning; Yujia Qin; Kai Xue; Liyou Wu; Zhili He; James W Voordeckers; Joy D Van Nostrand; Vanessa Buzzard; Sean T Michaletz; Brian J Enquist; Michael D Weiser; Michael Kaspari; Robert Waide; Yunfeng Yang; James H Brown
Journal:  Nat Commun       Date:  2016-07-05       Impact factor: 14.919

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