| Literature DB >> 34521936 |
Akram Yazdani1,2, Mehdi Yaseri2, Shahpar Haghighat3, Ahmad Kaviani4, Hojjat Zeraati5.
Abstract
The Cox proportional hazards model is a widely used statistical method for the censored data that model the hazard rate rather than survival time. To overcome complexity of interpreting hazard ratio, quantile regression was introduced for censored data with more straightforward interpretation. Different methods for analyzing censored data using quantile regression model, have been introduced. The quantile regression approach models the quantile function of failure time and investigates the covariate effects in different quantiles. In this model, the covariate effects can be changed for patients with different risk and is a flexible model for controlling the heterogeneity of covariate effects. We illustrated and compared five methods in quantile regression for right censored data included Portnoy, Wang and Wang, Bottai and Zhang, Yang and De Backer methods. The comparison was made through the use of these methods in modeling the survival time of breast cancer. According to the results of quantile regression models, tumor grade and stage of the disease were identified as significant factors affecting 20th percentile of survival time. In Bottai and Zhang method, 20th percentile of survival time for a case with higher unit of stage decreased about 14 months and 20th percentile of survival time for a case with higher grade decreased about 13 months. The quantile regression models acted the same to determine prognostic factors of breast cancer survival in most of the time. The estimated coefficients of five methods were close to each other for quantiles lower than 0.1 and they were different from quantiles upper than 0.1.Entities:
Mesh:
Year: 2021 PMID: 34521936 PMCID: PMC8440570 DOI: 10.1038/s41598-021-97665-x
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Assumptions and features Cox, AFT, Portnoy, Wang and Wang, Bottai and Zhang, Yang and De Backer methods.
| models | Assumptions | Advantages | Disadvantages |
|---|---|---|---|
| Cox method | Proportional hazard | No need to consider a specific probability distribution for the survival time; Can used in many types of survival model | The effect of the included covariates is multiplicative The complexity of the HR estimate interpretation |
| AFT method | The effect of a covariate is to accelerate or decelerate the life course of a disease by some constant Needs homogeneous covariates effect | direct interpretation of covariate effects on event time Can used in many types of survival model | Error term follow a specific probability distribution Failing to capture heterogeneity of covariate effects |
| Portnoy method | The model at lower quantiles are all linear (global-linearity) | The effect of covariates is not restricted to be constant No distributional assumptions about the regression error term | The 'global' linearity assumption |
| Bottai and Zhang method | The residuals follow a asymmetric Laplace distribution require -linearity assumption | The effect of covariates is not restricted to be constant Correct coverage and shorter computation time | Error term follow a Laplace distribution |
| Wang and Wang method | Require a locally linear quantile regression | Not require global-linearity assumption | Requires estimating the true distribution of the outcome variable |
| Yang method | Operates under the assumption that all the quantile functions are identifiable | Can handle different forms of censoring the estimator can achieve significant efficiency gains over the existing methods | It runs a risk of finding estimates even for non-identifiable quantile functions |
| De Backer method | Require a locally linear quantile regression | Consistency and asymptotic normality of estimator | Restrict to the estimation of the classical linear regression model |
Multivariate analysis of prognostic factors of breast cancer survival with Cox model and AFT model.
| Variables | Cox model | AFT model | ||||
|---|---|---|---|---|---|---|
| HR | p-value | 95% Cl | Coef | p-value | 95% Cl | |
| Age | 0.99 | 0.753 | (0.98, 1.01) | 0.002 | 0.749 | (− 0.01, 0.01) |
| MRM | 1.00 | 1.00 | ||||
| BCS | 0.58 | 0.079 | (0.32, 1.06) | 0.40 | 0.104 | (− 0.08, 0.88) |
| Stage | 3.12 | < 0.001 | (2.55, 3.81) | − 0.94 | < 0.001 | (− 1.11, − 0.77) |
| Grade | 1.71 | < 0.001 | (1.27, 2.30) | − 0.45 | < 0.001 | (− 0.69, − 0.21) |
HR Hazard Ratio, Coef. Estimated parameter, CI Confidence Interval, AFT Accelerated failure time.
Figure 1Kaplan–Meier plot of survival time of patient with breast cancer.
Multivariate analysis of prognostic factors of breast cancer survival with Portnoy, Wang and Wang, Bottai and Zhang, Yang and De Backer methods.
| Quantiles | Coef. (95% Cl) | ||
|---|---|---|---|
| 0.10 | 0.20 | 0.40 | |
| Intercept | 48.96 (22.65, 75.26)* | 79.97 (44.82, 115.12)* | 133.74 (87.57, 179.92)* |
| Age | 0.02 (− 0.23, 0.26) | 0.03 (− 0.30, 0.36) | 0.09 (− 0.36, 0.53) |
| Surgical procedure (BCS) | 11.28 (− 2.97, 25.54) | 14.34 (− 1.07, 29.75) | 24.07 (3.03, 45.14)* |
| Stage | − 10.59 (− 14.23, − 6.95)* | − 14.28 (− 19.01, − 9.56)* | − 28.87 (− 35.001, − 22.74)* |
| Grade | − 6.85 (− 13.14, − 0.57)* | − 12.53 (− 20.88, − 4.18)* | − 12.39 (− 23.60, − 1.19)* |
| Intercept | 56.94 (37.86,76.65)* | 102.05 (81.86,145.50)* | 199.77 (87.30,304.03)* |
| Age | 0.08 (− 0.23,0.37) | 0.19 (− 0.99,0.62) | 0.06 (− 0.60,0.45) |
| Surgical procedure (BCS) | 14.34 (5.49,27.91)* | 10.36 (1.35,22.13)* | 22.31 (− 26.34,116.88) |
| Stage | − 12.61 (− 16.96, − 8.56)* | − 18.06 (− 24.26, − 6.85)* | − 43.58 (− 49.06, − 39.17)* |
| Grade | − 10.24 (− 13.48, − 3.36)* | − 18.31(− 25.81,13.60)* | − 13.92 (− 32.98, 20.41) |
| Intercept | 17.57 (0.51, 45.50)* | 42.05 (5.51, 69.10)* | 111.39 (34.85, 160.72)* |
| Age | 0.02 (− 0.19, 0.19) | − 0.02 (− 0.22, 0.25) | − 0.08 (− 0.48, 0.56) |
| Surgical procedure (BCS) | 11.95 (3.42, 31.14)* | 17.68 (− 1.85, 35.57) | 8.96 (− 8.36, 60.73) |
| Stage | − 5.26 (− 8.41, − 2.69)* | − 8.26 (− 11.37, − 5.19)* | − 18.59 (− 24.51, − 10.65)* |
| Grade | − 2.33 (− 8.11, 0.32) | − 6.51 (− 10.14, − 0.45)* | − 11.57 (− 25.53, − 3.30)* |
| Intercept | 52.79 (25.79, 82.24)* | 73.91 (40.12, 126.08)* | 123.42 (74.45, 171.28)* |
| Age | 0.02 (− 0.31, 0.24) | − 0.07 (− 0.36, 0.41) | − 0.03 (− 0.46, 0.58) |
| Surgical procedure (BCS) | 3.62 (− 5.37, 25.95) | 9.24 (− 5.37, 27.11) | 10.98 (− 15.25, 41.63) |
| Stage | − 10.05 (− 13.62, − 5.88)* | − 12.56 (− 20.15, − 9.09)* | − 26.81 (− 35.98, − 15.86)* |
| Grade | − 5.91 (− 14.88, − 0.81)* | − 8.76 (− 19.49, − 3.01)* | − 5.30 (− 21.46, 2.24) |
| Intercept | 53.11 (23.09, 93.38)* | 87.20 (44.17, 133.21)* | 198.89 (44.49, 227.96)* |
| Age | 0.06 (− 0.26, 0.32) | 0.12 (− 0.23, 0.51) | 0.03 (− 0.29, 0.49) |
| Surgical procedure (BCS) | 15.63 (− 1.59, 31.70) | 14.71 (− 0.92, 37.20) | 11.05 (− 16.74, 30.51 |
| Stage | − 12.04 (− 17.59, − 7.07)* | − 16.64 (− 23.77, − 9.74)* | − 40.23 (− 41.28, − 9.74)* |
| Grade | − 9.68 (− 16.89, − 2.70)* | − 14.53 (− 26.03, − 5.47)* | − 14.20 (− 25.80, − 3.51)* |
Coef. Estimated parameter, CI Confidence Interval.
*P-value < 0.05.
Figure 2Censored quantile regression coefficients plots and their confidence intervals (dashed line) for Portnoy method and conditional quantile effects estimated by Cox model (red line).
Figure 3Censored quantile regression coefficients plots and their confidence intervals (dashed line) for Bottai and Zhang method.
Figure 4Censored quantile regression coefficients plots and their confidence intervals (dashed line) for Yang method.
Figure 5Censored quantile regression coefficients plots and their confidence intervals (dashed line) for Wang and Wang method.
Figure 6Censored quantile regression coefficients plots and their confidence intervals (dashed line) for De Backer method.
Figure 7Censored quantile regression coefficients plots for Portnoy (dotdash line), Wang and Wang (dashed line), Bottai and Zhang (longdash line), Yang (dotted line), and De Backer (solid line) methods.