Literature DB >> 34516126

Sequence Determines the Switch in the Fibril Forming Regions in the Low-Complexity FUS Protein and Its Variants.

Abhinaw Kumar1, Debayan Chakraborty1, Mauro Lorenzo Mugnai1, John E Straub2, D Thirumalai1.   

Abstract

Residues spanning distinct regions of the low-complexity domain of the RNA-binding protein, Fused in Sarcoma (FUS-LC), form fibril structures with different core morphologies. Solid-state NMR experiments show that the 214-residue FUS-LC forms a fibril with an S-bend (core-1, residues 39-95), while the rest of the protein is disordered. In contrast, the fibrils of the C-terminal variant (FUS-LC-C; residues 111-214) have a U-bend topology (core-2, residues 112-150). Absence of the U-bend in FUS-LC implies that the two fibril cores do not coexist. Computer simulations show that these perplexing findings could be understood in terms of the population of sparsely populated fibril-like excited states in the monomer. The propensity to form core-1 is higher compared to core-2. We predict that core-2 forms only in truncated variants that do not contain the core-1 sequence. At the monomer level, sequence-dependent enthalpic effects determine the relative stabilities of the core-1 and core-2 topologies.

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Year:  2021        PMID: 34516126      PMCID: PMC8826754          DOI: 10.1021/acs.jpclett.1c02310

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.888


  43 in total

1.  Relationship between population of the fibril-prone conformation in the monomeric state and oligomer formation times of peptides: insights from all-atom simulations.

Authors:  Hoang Bao Nam; Maksim Kouza; Hoang Zung; Mai Suan Li
Journal:  J Chem Phys       Date:  2010-04-28       Impact factor: 3.488

2.  Factors governing fibrillogenesis of polypeptide chains revealed by lattice models.

Authors:  Mai Suan Li; Nguyen Truong Co; Govardhan Reddy; Chin-Kun Hu; J E Straub; D Thirumalai
Journal:  Phys Rev Lett       Date:  2010-11-17       Impact factor: 9.161

3.  Propensity to form amyloid fibrils is encoded as excitations in the free energy landscape of monomeric proteins.

Authors:  Pavel I Zhuravlev; Govardhan Reddy; John E Straub; D Thirumalai
Journal:  J Mol Biol       Date:  2014-05-17       Impact factor: 5.469

4.  Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.

Authors:  Dylan T Murray; Masato Kato; Yi Lin; Kent R Thurber; Ivan Hung; Steven L McKnight; Robert Tycko
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

5.  A Lattice Model of Charge-Pattern-Dependent Polyampholyte Phase Separation.

Authors:  Suman Das; Adam Eisen; Yi-Hsuan Lin; Hue Sun Chan
Journal:  J Phys Chem B       Date:  2018-02-15       Impact factor: 2.991

6.  Model for disordered proteins with strongly sequence-dependent liquid phase behavior.

Authors:  Antonia Statt; Helena Casademunt; Clifford P Brangwynne; Athanassios Z Panagiotopoulos
Journal:  J Chem Phys       Date:  2020-02-21       Impact factor: 3.488

7.  Dynamics of Asp23-Lys28 salt-bridge formation in Abeta10-35 monomers.

Authors:  Bogdan Tarus; John E Straub; D Thirumalai
Journal:  J Am Chem Soc       Date:  2006-12-20       Impact factor: 15.419

8.  Side Chain Hydrogen-Bonding Interactions within Amyloid-like Fibrils Formed by the Low-Complexity Domain of FUS: Evidence from Solid State Nuclear Magnetic Resonance Spectroscopy.

Authors:  Dylan T Murray; Robert Tycko
Journal:  Biochemistry       Date:  2020-01-10       Impact factor: 3.162

9.  Atomic structures of low-complexity protein segments reveal kinked β sheets that assemble networks.

Authors:  Michael P Hughes; Michael R Sawaya; David R Boyer; Lukasz Goldschmidt; Jose A Rodriguez; Duilio Cascio; Lisa Chong; Tamir Gonen; David S Eisenberg
Journal:  Science       Date:  2018-02-09       Impact factor: 47.728

10.  Connecting Coil-to-Globule Transitions to Full Phase Diagrams for Intrinsically Disordered Proteins.

Authors:  Xiangze Zeng; Alex S Holehouse; Ashutosh Chilkoti; Tanja Mittag; Rohit V Pappu
Journal:  Biophys J       Date:  2020-06-23       Impact factor: 4.033

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  3 in total

Review 1.  Conformational Variability of Amyloid-β and the Morphological Diversity of Its Aggregates.

Authors:  Maho Yagi-Utsumi; Koichi Kato
Journal:  Molecules       Date:  2022-07-26       Impact factor: 4.927

2.  Modified Protein-Water Interactions in CHARMM36m for Thermodynamics and Kinetics of Proteins in Dilute and Crowded Solutions.

Authors:  Daiki Matsubara; Kento Kasahara; Hisham M Dokainish; Hiraku Oshima; Yuji Sugita
Journal:  Molecules       Date:  2022-09-05       Impact factor: 4.927

3.  REMD Simulations of Full-Length Alpha-Synuclein Together with Ligands Reveal Binding Region and Effect on Amyloid Conversion.

Authors:  Pavel I Semenyuk
Journal:  Int J Mol Sci       Date:  2022-09-30       Impact factor: 6.208

  3 in total

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