Literature DB >> 34514504

Contraceptive and Infertility Target DataBase: a contraceptive drug development tool for targeting and analysis of human reproductive specific tissues†.

Subarna Sinha1, Merrill Knapp1, John Pywtorak1, Greg McCain1, Kenneth Wingerden1, Colin VanDervoort1, J Mark Gondek1, Peter Madrid1, Toufan Parman1, Stephen Gerrard2, Jill E Long3, Diana L Blithe3, Stuart Moss4, Min S Lee3.   

Abstract

The long and challenging drug development process begins with discovery biology for the selection of an appropriate target for a specific indication. Target is a broad term that can be applied to a range of biological entities such as proteins, genes, and ribonucleic acids (RNAs). Although there are numerous databases available for mining biological entities, publicly available searchable, downloadable databases to aid in target selection for a specific disease or indication (e.g., developing contraceptives and infertility treatments) are limited. We report the development of the Contraceptive and Infertility Target DataBase (https://www.citdbase.org), which provides investigators an interface to mine existing transcriptomic and proteomic resources to identify high-quality contraceptive/infertility targets. The development of similar databases is applicable to the identification of targets for other diseases and conditions. Published by Oxford University Press on behalf of Society for the Study of Reproduction 2021.

Entities:  

Keywords:  Infertility; contraceptive; database; proteomics targets; transcriptomic targets

Mesh:

Substances:

Year:  2021        PMID: 34514504      PMCID: PMC8831241          DOI: 10.1093/biolre/ioab172

Source DB:  PubMed          Journal:  Biol Reprod        ISSN: 0006-3363            Impact factor:   4.161


  39 in total

1.  Haploinsufficiency of protamine-1 or -2 causes infertility in mice.

Authors:  C Cho; W D Willis; E H Goulding; H Jung-Ha; Y C Choi; N B Hecht; E M Eddy
Journal:  Nat Genet       Date:  2001-05       Impact factor: 38.330

2.  Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice.

Authors:  Haruhiko Miyata; Julio M Castaneda; Yoshitaka Fujihara; Zhifeng Yu; Denise R Archambeault; Ayako Isotani; Daiji Kiyozumi; Maya L Kriseman; Daisuke Mashiko; Takafumi Matsumura; Ryan M Matzuk; Masashi Mori; Taichi Noda; Asami Oji; Masaru Okabe; Renata Prunskaite-Hyyrylainen; Ramiro Ramirez-Solis; Yuhkoh Satouh; Qian Zhang; Masahito Ikawa; Martin M Matzuk
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-29       Impact factor: 11.205

3.  Proteomics. Tissue-based map of the human proteome.

Authors:  Mathias Uhlén; Linn Fagerberg; Björn M Hallström; Cecilia Lindskog; Per Oksvold; Adil Mardinoglu; Åsa Sivertsson; Caroline Kampf; Evelina Sjöstedt; Anna Asplund; IngMarie Olsson; Karolina Edlund; Emma Lundberg; Sanjay Navani; Cristina Al-Khalili Szigyarto; Jacob Odeberg; Dijana Djureinovic; Jenny Ottosson Takanen; Sophia Hober; Tove Alm; Per-Henrik Edqvist; Holger Berling; Hanna Tegel; Jan Mulder; Johan Rockberg; Peter Nilsson; Jochen M Schwenk; Marica Hamsten; Kalle von Feilitzen; Mattias Forsberg; Lukas Persson; Fredric Johansson; Martin Zwahlen; Gunnar von Heijne; Jens Nielsen; Fredrik Pontén
Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

4.  Declines in Unintended Pregnancy in the United States, 2008-2011.

Authors:  Lawrence B Finer; Mia R Zolna
Journal:  N Engl J Med       Date:  2016-03-03       Impact factor: 91.245

5.  Targeted disruption of the Akap4 gene causes defects in sperm flagellum and motility.

Authors:  Kiyoshi Miki; William D Willis; Paula R Brown; Eugenia H Goulding; Kerry D Fulcher; Edward M Eddy
Journal:  Dev Biol       Date:  2002-08-15       Impact factor: 3.582

6.  A gene trap knockout of the abundant sperm tail protein, outer dense fiber 2, results in preimplantation lethality.

Authors:  Nicholas A Salmon; Renee A Reijo Pera; Eugene Yujun Xu
Journal:  Genesis       Date:  2006-11       Impact factor: 2.487

Review 7.  The mammalian phenotype ontology: enabling robust annotation and comparative analysis.

Authors:  Cynthia L Smith; Janan T Eppig
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Nov-Dec

8.  The gene for human transition protein 2: nucleotide sequence, assignment to the protamine gene cluster, and evidence for its low expression.

Authors:  G Schlüter; H Kremling; W Engel
Journal:  Genomics       Date:  1992-10       Impact factor: 5.736

9.  Safety and Pharmacokinetics of Single-Dose Novel Oral Androgen 11β-Methyl-19-Nortestosterone-17β-Dodecylcarbonate in Men.

Authors:  Sherry Wu; Fiona Yuen; Ronald S Swerdloff; Youngju Pak; Arthi Thirumalai; Peter Y Liu; John K Amory; Feng Bai; Laura Hull; Diana L Blithe; Bradley D Anawalt; Toufan Parman; Kyuri Kim; Min S Lee; William J Bremner; Stephanie T Page; Christina Wang
Journal:  J Clin Endocrinol Metab       Date:  2019-03-01       Impact factor: 6.134

10.  Housekeeping and tissue-specific genes in mouse tissues.

Authors:  Kouame E Kouadjo; Yuichiro Nishida; Jean F Cadrin-Girard; Mayumi Yoshioka; Jonny St-Amand
Journal:  BMC Genomics       Date:  2007-05-22       Impact factor: 3.969

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