| Literature DB >> 34496133 |
Neelam Mukherjee1, Niannian Ji1, Xi Tan2, Chun-Lin Lin2, Emily Rios1, Chun-Liang Chen2, Tim Huang2, Robert S Svatek1.
Abstract
PURPOSE: Human innate lymphoid cells (hILCs) are lineage-negative immune cells that do not express rearranged adaptive antigen receptors. Natural killer (NK) cells are hILCs that contribute to cancer defense. The role of non-NK hILCs in cancer is unclear. Our study aimed to characterize non-NK hILCs in bladder cancer. EXPERIMENTALEntities:
Keywords: ILC1s; Th17; bladder cancer; clustering; innate lymphoid cells
Mesh:
Substances:
Year: 2021 PMID: 34496133 PMCID: PMC8525153 DOI: 10.1002/cam4.4243
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
Characteristics of patient cohort. The clinical parameters of the selected bladder patient cohort (n = 21) are listed
| Mean (range) age | 71.86 (66.71–77.01) |
|---|---|
| Gender | |
| Female | 4 (19.05%) |
| Male | 17 (80.95%) |
| Ethnicity | |
| Hispanic | 6 (28.57%) |
| Non‐Hispanic | 15 (71.43%) |
| Stage | |
| T2 | 12 (57.14%) |
| T3 | 6 (28.57%) |
| T4 | 3 (14.29%) |
| Histologic subtype | |
| Pure urothelial carcinoma | 13 (61.90%) |
| Urothelial carcinoma with squamous differentiation | 7 (33.33%) |
| Urothelial carcinoma with small cell carcinoma | 1 (4.76%) |
| Prior chemotherapy | |
| Yes | 8 (38.10%) |
| No | 13 (61.90%) |
| Carboplatin | 1 (4.76%) |
| Gemcitabine | 1 (4.76%) |
| Gemzar/Cisplatin | 4 (19.05%) |
| Gemcitabine/Taxol | 1 (4.76%) |
| Unknown | 1 (4.76%) |
| Prior radiation | |
| Yes | 3 (14.29%) |
| No | 18 (85.71%) |
| Any tobacco use | |
| Yes | 16 (76.19%) |
| No | 5 (23.81%) |
FIGURE 1ILC1s are the most abundant tumor‐infiltrating innate lymphoid cells in bladder cancer and are associated with higher bladder tumor stage. Human bladder tumor tissues (n = 21) were harvested and processed into single cell suspensions and analyzed with CyTOF. (A) Non‐NK ILC1s were identified as CD45+Lineage (CD3, CD19, CD14, ILT3)−CD56−CD127+CRTH2−c‐Kit−; ILC2s defined as CD45+Lin−CD56−CD127+CRTH2+; and ILC3s defined as CD45+Lin‐CD56‐CD127+CRTH2−c‐Kit+, which were further subdivided into NKp44+ILC3s and NKp44−ILC3s. A script (R) was written to filter out target cells and ILC 1/2/3 were identified. In the script, expression levels less than 1 are considered negative, and higher or equal to 1 are considered positive. With this criterion, in all CD45+ cells, the percentages of ILC1/2/3 are calculated. (B) % of ILC1s is plotted across the pathological stage in bladder cancer
FIGURE 2Different ILCs exhibit differential expression of cytokine and regulatory markers. (A) A t‐SNE plot showing the expression of different markers used in the identification of ILCs. (B) Different expressions of transcription factors and cytokines in ILC1, ILC2, and ILC3s are plotted as violin plots
FIGURE 3Model‐based clustering reveals nine clusters of ILCs. (A) Model‐based clustering was performed on the t‐SNE coordinates of ILCs with R package mclust. Model‐based clustering revealed nine unique clusters of ILCs. (B) Number of ILC1s, ILC2s, and ILC3s in the nine clusters of ILCs is plotted
FIGURE 4Different expression of 19 markers in the 9 clusters of ILCs. Violin plots showing the expression distribution of selected genes in the nine clusters of ILCs.