| Literature DB >> 34490735 |
Weichun Chen1, Baozhong Zhang1, Xiao Chang1.
Abstract
Osteoporosis is one bone disease characterized with skeletal impairment, bone strength reduced and fracture risk enhanced. The regulation processes of bone metabolism are associated with several factors such as mechanical stimulation, epigenetic regulation and hormones. However, the mechanism of osteoporosis remains unsatisfactory. Increasing high-throughput RNA sequencing and circular RNAs (circRNAs) microarray studies indicated that circRNAs are differentially expressed in osteoporosis. Growing functional studies further pinpointed specific deregulated expressed circRNAs (e.g., circ_28313, circ_0016624, circ_0006393, circ_0076906 and circ_0048211) for their functions involved in bone metabolism, including bone marrow stromal cells (BMSCs) differentiation, proliferation and apoptosis. Moreover, CircRNAs (circ_0002060, Circ_0001275 and Circ_0001445) may be acted as diagnostic biomarkers for osteoporosis. This review discussed recent progresses in the circRNAs expression profiling analyses and their potential functions in regulating BMSCs differentiation, proliferation and apoptosis.Entities:
Keywords: ceRNA; circRNAs; microRNA; osteoporosis
Mesh:
Substances:
Year: 2021 PMID: 34490735 PMCID: PMC8500962 DOI: 10.1111/jcmm.16906
Source DB: PubMed Journal: J Cell Mol Med ISSN: 1582-1838 Impact factor: 5.310
circRNAs expression profiles in osteoporosis
| Num | Method | Sample | Upregulated | Downregulated | Reference |
|---|---|---|---|---|---|
| 1 | Microarray RT‐PCR | Plasma | 162 circRNAs | 95 circRNAs |
|
| 2 | Microarray RT‐PCR | PBMCs | 203 circRNAs | 178 circRNAs |
|
| 3 | RNA‐sequencing RT‐PCR | Plasma | 106 circRNAs | 154 circRNAs |
|
| 4 | Microarray RT‐PCR | Bone marrow monocyte | 29 circRNAs | 52 circRNAs |
|
| 5 | RNA‐sequencing RT‐PCR | Plasma | 211 circRNAs | 176 circRNAs |
|
| 6 | Microarray RT‐PCR | OPCSs | 95 circRNAs | 15 circRNAs |
|
| 7 | RNA‐sequencing RT‐PCR | BMSCs | 24 circRNAs | 21 circRNAs |
|
| 8 | Microarray RT‐PCR | Plasma | 34 circRNAs | 35 circRNAs |
|
| 9 | Microarray RT‐PCR | Bone tissues | 2645 circRNAs | 2327 circRNAs |
|
| 10 | Microarray RT‐PCR | Plasma | 554 circRNAs | 330 circRNAs |
|
| 11 | RNA‐sequencing RT‐PCR | Plasma | 186 circRNAs | 64 circRNAs |
|
| 12 | RNA‐sequencing RT‐PCR | BMSCs | 173 circRNAs | 36 circRNAs |
|
| 13 | Microarray RT‐PCR | Serum | 376 circRNAs | 213 circRNAs |
|
| 14 | Microarray RT‐PCR | Peripheral blood | 195 circRNAs | 203 circRNAs |
|
Abbreviations: OC, osteoclast; OPCSs, precursors.
CircRNAs identified from RNA‐sequencing or microarray were confirmed by RT‐qPCR in osteoporosis
| Num | Method | Sample | Upregulated | Downregulated | Reference |
|---|---|---|---|---|---|
| 1 | Microarray RT‐PCR | Plasma | circ_0081047, circ_0068459, circ_0006873 circ_0002060 | circ_0017736 circ_0062582 |
|
| 2 | Microarray RT‐PCR | PBMCs | circ_0028882, circ_0001275, circ_0006766, circ_0007788 circ_0003391 | circ_0006801 |
|
| 3 | RNA‐sequencing RT‐PCR | Plasma | circ_0010452, circ_0022348, circ_0015566, circ_0003323 circ_0013121 | circ_0021739, circ _0011269, circ_0019693, circ_0005245 circ_0010349 |
|
| 4 | Microarray RT‐PCR | Bone marrow monocyte | circ_012460, circ_8313, circ_28312, circ_28309, circ_40206, circ_28236 |
| |
| 5 | RNA‐sequencing RT‐PCR | Plasma | circ_0057340 circ_0134944 | circ_0005692, circ_0088422 circ_0076906 |
|
| 6 | Microarray RT‐PCR | OPCSs | circ_0000284, circ_0000638, circ_0000994, circ_0001776, circ_0002922, circ_0007710, circ_0113954 |
| |
| 7 | RNA‐sequencing RT‐PCR | BMSCs | circ‐0020 | circ‐3832 |
|
| 8 | Microarray RT‐PCR | Plasma | circ_0019693, circ_0011269, circ_0028958, circ_0005245, circ_0006487 circ_0010452 |
| |
| 9 | RNA‐sequencing RT‐PCR | BMSCs | circ_0002770, circ_0073244, circ_0003126, circ_0002867, circ_0008210, circ_0037026, circ_0005015, circ_0003865 circ_0006935 |
| |
| 10 | Microarray RT‐PCR | Peripheral blood | circ_0004276, circ_0003060, circ_0005657, circ_0020485, circ_0017615, circ_0004846, circ_0000968, circ_0003426, circ_0006132 circ_0042409 | circ_0035291, circ_0048949, circ_0015289, circ_0006342, circ_0000378, circ_0038918, circ_0039344, circ_0046964, circ_0007976 circ_0003990 |
|
Abbreviations: OC, osteoclast; OPCSs, precursors.
FIGURE 1miRNA, lncRNA and circRNA affect osteoblasts and osteoclasts and participate in the development of osteoporosis
FIGURE 2Dysregulated circRNAs in osteoporosis. Until now, there are 34 circRNAs were upregulated and 31 circRNAs were downregulated in osteoporosis
Dysregulated circRNAs in osteoporosis
| Name | Dysregulation | Sponge target | Function | Related gene | Role | Reference |
|---|---|---|---|---|---|---|
| circ_0002060 | Upregulated | Biomarker |
| |||
| Circ_0001275 | Upregulated | Biomarker |
| |||
| circ_28313 | Upregulated | miR‐195a | Osteoclast differentiation | CSF1 | Harmfulness |
|
| circ_0016624 | Downregulated | miR‐98 | Osteogenesis differentiation | BMP2 | Protective |
|
| circ_0006393 | Downregulated | miR‐145‐5p | Osteogenesis differentiation | FOXO1 | Protective |
|
| circ_0076906 | Downregulated | miR‐1305 | MSCs differentiation | OGN | Protective |
|
| circ_0048211 | Downregulated | miR‐93‐5p | MSCs differentiation | BMP2 | Protective |
|
| circ‐Rtn4 | miR‐146a | Differentiation | Protective |
| ||
| circ_0011269 | Downregulated | miR‐122 | Differentiation | RUNX2 | Protective |
|
| circ_0026827 | Downregulated | miR‐188‐3p | Differentiation | RUNX1 Beclin1 | Protective |
|
| circ_0076690 | Downregulated | miR‐152 | Differentiation | Protectivebiomarker |
| |
| circ_0024097 | Downregulated | miR‐376b‐3p | Differentiation | YAP1 Wnt/β‐catenin | Protective |
|
| Circ‐SLC8A1 | Downregulated | miR‐516b‐5p | Differentiation | AKAP2 | Protective |
|
| CircFOXP1 | Downregulated | miR‐33a‐5p | Differentiation | FOXP1 | Protective |
|
| Circ_0001445 | Downregulated | Biomarker |
| |||
| circ_0007059 | Upregulated | miR‐378 | Differentiation | BMP‐2 | Harmfulness |
|
| CircHmbox1 | Upregulated | miR‐1247‐5p | Differentiation | Bcl6 | Harmfulness |
|
| circ_0003865 | Upregulated | miR‐3653‐3p | Differentiation | GAS1 | Harmfulness |
|
| circ_0006859 | Upregulated | miR‐431‐5p | Differentiation | ROCK1 | Harmfulness |
|
| circ_0006215 | Downregulated | miR‐942‐5p | Differentiation | VEGF RUNX2 | Protective |
|
| circ_0021739 | Downregulated | miR‐502‐5p | Differentiation | Protective biomarker |
| |
| circ_0001052 | Downregulated | miR‐124‐3p | Proliferation | Wnt4/β‐catenin | Protective |
|
| Circ_0062582 | Downregulated | miR‐145 | Differentiation | CBFB | Protective |
|
| circ_0001275 | miR‐377 | Proliferation | CDKN1B | Protective |
|
FIGURE 3circRNAs acts as biomarkers for osteoporosis. circ_0002060, circ_0001275, circ_0076690, circ_0001445 and circ_0021739 may be one potential biomarkers for osteoporosis
FIGURE 4circRNAs regulated genes expression via sponging miRNAs in osteoporosis. Dysregulation expression of circRNA sponged related miRNAs expression and then regulating their target gene involved in the development of osteoporosis. Upper circRNAs represent upregulated in osteoporosis, while below circRNAs represent downregulated