Literature DB >> 34482369

Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats.

Diogo Milani1, Francisco J Ruiz-Ruano2,3, Juan Pedro M Camacho4, Diogo C Cabral-de-Mello5.   

Abstract

In addition to the normal set of standard (A) chromosomes, some eukaryote species harbor supernumerary (B) chromosomes. In most cases, B chromosomes show differential condensation with respect to A chromosomes and display dark C-bands of heterochromatin, and some of them are highly enriched in repetitive DNA. Here we perform a comprehensive NGS (next-generation sequencing) analysis of the repeatome in the grasshopper Abracris flavolineata aimed at uncovering the molecular composition and origin of its B chromosome. Our results have revealed that this B chromosome shows a DNA repeat content highly similar to the DNA repeat content observed for euchromatic (non-C-banded) regions of A chromosomes. Moreover, this B chromosome shows little enrichment for high-copy repeats, with only a few elements showing overabundance in B-carrying individuals compared to the 0B individuals. Consequently, the few satellite DNAs (satDNAs) mapping on the B chromosome were mostly restricted to its centromeric and telomeric regions, and they displayed much smaller bands than those observed on the A chromosomes. Our data support the intraspecific origin of the B chromosome from the longest autosome by misdivision, isochromosome formation, and additional restructuring, with accumulation of specific repeats in one or both B chromosome arms, yielding a submetacentric B. Finally, the absence of B-specific satDNAs, which are frequent in other species, along with its euchromatic nature, suggest that this B chromosome arose recently and might still be starting a heterochromatinization process. On this basis, it could be a good model to investigate the initial steps of B chromosome evolution.
© 2021. The Author(s), under exclusive licence to The Genetics Society.

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Year:  2021        PMID: 34482369      PMCID: PMC8551250          DOI: 10.1038/s41437-021-00470-5

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  64 in total

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2.  Spreading synaptonemal complexes of B isochromosomes in the grasshopper Omocestus burri.

Authors:  A L Cerro; A Fernández; J L Santos
Journal:  Genome       Date:  1994-12       Impact factor: 2.166

3.  RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

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Journal:  Bioinformatics       Date:  2013-02-01       Impact factor: 6.937

4.  Plantago lagopus B Chromosome Is Enriched in 5S rDNA-Derived Satellite DNA.

Authors:  Katrin Kumke; Jiří Macas; Jörg Fuchs; Lothar Altschmied; Jasmeet Kour; Manoj K Dhar; Andreas Houben
Journal:  Cytogenet Genome Res       Date:  2016-05-13       Impact factor: 1.636

5.  The integration of supernumerary chromosomes into the orthopteran genome.

Authors:  G M Hewitt
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1974

6.  Chromosomal Mapping of Repeat DNA in Bergiaria westermanni (Pimelodidae, Siluriformes): Localization of 45S rDNA in B Chromosomes.

Authors:  Geovana C Malimpensa; Josiane B Traldi; Danyelle Toyama; Flávio Henrique-Silva; Marcelo R Vicari; Orlando Moreira-Filho
Journal:  Cytogenet Genome Res       Date:  2018-04-11       Impact factor: 1.636

7.  Cytomolecular characterization of de novo formed rye B chromosome variants.

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Journal:  Mol Cytogenet       Date:  2012-07-16       Impact factor: 2.009

8.  The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.

Authors:  Jeffrey J Coleman; Steve D Rounsley; Marianela Rodriguez-Carres; Alan Kuo; Catherine C Wasmann; Jane Grimwood; Jeremy Schmutz; Masatoki Taga; Gerard J White; Shiguo Zhou; David C Schwartz; Michael Freitag; Li-Jun Ma; Etienne G J Danchin; Bernard Henrissat; Pedro M Coutinho; David R Nelson; Dave Straney; Carolyn A Napoli; Bridget M Barker; Michael Gribskov; Martijn Rep; Scott Kroken; István Molnár; Christopher Rensing; John C Kennell; Jorge Zamora; Mark L Farman; Eric U Selker; Asaf Salamov; Harris Shapiro; Jasmyn Pangilinan; Erika Lindquist; Casey Lamers; Igor V Grigoriev; David M Geiser; Sarah F Covert; Esteban Temporini; Hans D Vanetten
Journal:  PLoS Genet       Date:  2009-08-28       Impact factor: 5.917

9.  Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.

Authors:  Daniël P Melters; Keith R Bradnam; Hugh A Young; Natalie Telis; Michael R May; J Graham Ruby; Robert Sebra; Paul Peluso; John Eid; David Rank; José Fernando Garcia; Joseph L DeRisi; Timothy Smith; Christian Tobias; Jeffrey Ross-Ibarra; Ian Korf; Simon W L Chan
Journal:  Genome Biol       Date:  2013-01-30       Impact factor: 13.583

10.  Single origin of sex chromosomes and multiple origins of B chromosomes in fish genus Characidium.

Authors:  José Carlos Pansonato-Alves; Érica Alves Serrano; Ricardo Utsunomia; Juan Pedro M Camacho; Guilherme José da Costa Silva; Marcelo Ricardo Vicari; Roberto Ferreira Artoni; Cláudio Oliveira; Fausto Foresti
Journal:  PLoS One       Date:  2014-09-16       Impact factor: 3.240

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  1 in total

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Journal:  Animals (Basel)       Date:  2022-08-25       Impact factor: 3.231

  1 in total

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