Literature DB >> 34475312

Robotic sample changers for macromolecular X-ray crystallography and biological small-angle X-ray scattering at the National Synchrotron Light Source II.

Edwin O Lazo1, Stephen Antonelli1, Jun Aishima1, Herbert J Bernstein1, Dileep Bhogadi2, Martin R Fuchs1, Nicolas Guichard3, Sean McSweeney1, Stuart Myers1, Kun Qian1, Dieter Schneider1, Grace Shea-McCarthy1, John Skinner1, Robert Sweet1, Lin Yang1, Jean Jakoncic1.   

Abstract

Here we present two robotic sample changers integrated into the experimental stations for the macromolecular crystallography (MX) beamlines AMX and FMX, and the biological small-angle scattering (bioSAXS) beamline LiX. They enable fully automated unattended data collection and remote access to the beamlines. The system designs incorporate high-throughput, versatility, high-capacity, resource sharing and robustness. All systems are centered around a six-axis industrial robotic arm coupled with a force torque sensor and in-house end effectors (grippers). They have the same software architecture and the facility standard EPICS-based BEAST alarm system. The MX system is compatible with SPINE bases and Unipucks. It comprises a liquid nitrogen dewar holding 384 samples (24 Unipucks) and a stay-cold gripper, and utilizes machine vision software to track the sample during operations and to calculate the final mount position on the goniometer. The bioSAXS system has an in-house engineered sample storage unit that can hold up to 360 samples (20 sample holders) which keeps samples at a user-set temperature (277 K to 300 K). The MX systems were deployed in early 2017 and the bioSAXS system in early 2019.

Entities:  

Keywords:  AMX; FMX; LiX; NSLS-II; National Synchrotron Light Source II; automation; biological small-angle X-ray scattering; high-throughput; macromolecular crystallography

Mesh:

Substances:

Year:  2021        PMID: 34475312      PMCID: PMC8415329          DOI: 10.1107/S1600577521007578

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.557


  9 in total

1.  Automated sample mounting and alignment system for biological crystallography at a synchrotron source.

Authors:  Gyorgy Snell; Carl Cork; Robert Nordmeyer; Earl Cornell; George Meigs; Derek Yegian; Joseph Jaklevic; Jian Jin; Raymond C Stevens; Thomas Earnest
Journal:  Structure       Date:  2004-04       Impact factor: 5.006

2.  Advanced beamline automation for biological crystallography experiments.

Authors:  Carl Cork; James O'Neill; John Taylor; Thomas Earnest
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

Review 3.  Automation of sample mounting for macromolecular crystallography.

Authors:  F Cipriani; F Felisaz; L Launer; J S Aksoy; H Caserotto; S Cusack; M Dallery; F di-Chiaro; M Guijarro; J Huet; S Larsen; Mario Lentini; J McCarthy; S McSweeney; R Ravelli; M Renier; C Taffut; A Thompson; G A Leonard; M A Walsh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-09-19

4.  FMX - the Frontier Microfocusing Macromolecular Crystallography Beamline at the National Synchrotron Light Source II.

Authors:  Dieter K Schneider; Wuxian Shi; Babak Andi; Jean Jakoncic; Yuan Gao; Dileep K Bhogadi; Stuart F Myers; Bruno Martins; John M Skinner; Jun Aishima; Kun Qian; Herbert J Bernstein; Edwin O Lazo; Thomas Langdon; John Lara; Grace Shea-McCarthy; Mourad Idir; Lei Huang; Oleg Chubar; Robert M Sweet; Lonny E Berman; Sean McSweeney; Martin R Fuchs
Journal:  J Synchrotron Radiat       Date:  2021-02-25       Impact factor: 2.616

5.  The Stanford Automated Mounter: pushing the limits of sample exchange at the SSRL macromolecular crystallography beamlines.

Authors:  Silvia Russi; Jinhu Song; Scott E McPhillips; Aina E Cohen
Journal:  J Appl Crystallogr       Date:  2016-02-24       Impact factor: 3.304

6.  RoboDiff: combining a sample changer and goniometer for highly automated macromolecular crystallography experiments.

Authors:  Didier Nurizzo; Matthew W Bowler; Hugo Caserotto; Fabien Dobias; Thierry Giraud; John Surr; Nicolas Guichard; Gergely Papp; Matias Guijarro; Christoph Mueller-Dieckmann; David Flot; Sean McSweeney; Florent Cipriani; Pascal Theveneau; Gordon A Leonard
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-07-27       Impact factor: 7.652

7.  Solution scattering at the Life Science X-ray Scattering (LiX) beamline.

Authors:  Lin Yang; Stephen Antonelli; Shirish Chodankar; James Byrnes; Edwin Lazo; Kun Qian
Journal:  J Synchrotron Radiat       Date:  2020-03-31       Impact factor: 2.616

8.  MASSIF-1: a beamline dedicated to the fully automatic characterization and data collection from crystals of biological macromolecules.

Authors:  Matthew W Bowler; Didier Nurizzo; Ray Barrett; Antonia Beteva; Marjolaine Bodin; Hugo Caserotto; Solange Delagenière; Fabian Dobias; David Flot; Thierry Giraud; Nicolas Guichard; Mattias Guijarro; Mario Lentini; Gordon A Leonard; Sean McSweeney; Marcus Oskarsson; Werner Schmidt; Anatoli Snigirev; David von Stetten; John Surr; Olof Svensson; Pascal Theveneau; Christoph Mueller-Dieckmann
Journal:  J Synchrotron Radiat       Date:  2015-10-03       Impact factor: 2.616

9.  Towards a compact and precise sample holder for macromolecular crystallography.

Authors:  Gergely Papp; Christopher Rossi; Robert Janocha; Clement Sorez; Marcos Lopez-Marrero; Anthony Astruc; Andrew McCarthy; Hassan Belrhali; Matthew W Bowler; Florent Cipriani
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-09-29       Impact factor: 7.652

  9 in total
  2 in total

1.  Robotic sample changers for macromolecular X-ray crystallography and biological small-angle X-ray scattering at the National Synchrotron Light Source II. Corrigendum.

Authors:  Edwin O Lazo; Stephen Antonelli; Jun Aishima; Herbert J Bernstein; Dileep Bhogadi; Martin R Fuchs; Nicolas Guichard; Sean McSweeney; Stuart Myers; Kun Qian; Dieter Schneider; Grace Shea-McCarthy; John Skinner; Robert Sweet; Lin Yang; Jean Jakoncic
Journal:  J Synchrotron Radiat       Date:  2022-01-01       Impact factor: 2.616

2.  SPACA6 ectodomain structure reveals a conserved superfamily of gamete fusion-associated proteins.

Authors:  Tyler D R Vance; Patrick Yip; Elisabet Jiménez; Sheng Li; Diana Gawol; James Byrnes; Isabel Usón; Ahmed Ziyyat; Jeffrey E Lee
Journal:  Commun Biol       Date:  2022-09-17
  2 in total

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