Literature DB >> 34473100

Wilson statistics: derivation, generalization and applications to electron cryomicroscopy.

Amit Singer1.   

Abstract

The power spectrum of proteins at high frequencies is remarkably well described by the flat Wilson statistics. Wilson statistics therefore plays a significant role in X-ray crystallography and more recently in electron cryomicroscopy (cryo-EM). Specifically, modern computational methods for three-dimensional map sharpening and atomic modelling of macromolecules by single-particle cryo-EM are based on Wilson statistics. Here the first rigorous mathematical derivation of Wilson statistics is provided. The derivation pinpoints the regime of validity of Wilson statistics in terms of the size of the macromolecule. Moreover, the analysis naturally leads to generalizations of the statistics to covariance and higher-order spectra. These in turn provide a theoretical foundation for assumptions underlying the widespread Bayesian inference framework for three-dimensional refinement and for explaining the limitations of autocorrelation-based methods in cryo-EM.

Entities:  

Keywords:  Fourier analysis; Guinier plot; Wilson statistics; cryo-EM; power spectrum

Year:  2021        PMID: 34473100      PMCID: PMC8477642          DOI: 10.1107/S205327332100752X

Source DB:  PubMed          Journal:  Acta Crystallogr A Found Adv        ISSN: 2053-2733            Impact factor:   2.331


  9 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Sharpening high resolution information in single particle electron cryomicroscopy.

Authors:  J J Fernández; D Luque; J R Castón; J L Carrascosa
Journal:  J Struct Biol       Date:  2008-06-03       Impact factor: 2.867

3.  Re-examining the spectra of macromolecules. Current practice of spectral quasi B-factor flattening.

Authors:  J L Vilas; J Vargas; M Martinez; E Ramirez-Aportela; R Melero; A Jimenez-Moreno; E Garduño; P Conesa; R Marabini; D Maluenda; J M Carazo; C O S Sorzano
Journal:  J Struct Biol       Date:  2020-01-03       Impact factor: 2.867

4.  The reconstruction of structure from electron micrographs of randomly oriented particles.

Authors:  Z Kam
Journal:  J Theor Biol       Date:  1980-01-07       Impact factor: 2.691

Review 5.  The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules.

Authors:  R Henderson
Journal:  Q Rev Biophys       Date:  1995-05       Impact factor: 5.318

6.  A Bayesian view on cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Mol Biol       Date:  2011-11-12       Impact factor: 5.469

7.  Structure determination from single molecule X-ray scattering with three photons per image.

Authors:  Benjamin von Ardenne; Martin Mechelke; Helmut Grubmüller
Journal:  Nat Commun       Date:  2018-06-18       Impact factor: 14.919

8.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

  9 in total
  1 in total

1.  A molecular prior distribution for Bayesian inference based on Wilson statistics.

Authors:  Marc Aurèle Gilles; Amit Singer
Journal:  Comput Methods Programs Biomed       Date:  2022-04-22       Impact factor: 7.027

  1 in total

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