Literature DB >> 34458688

Application of Convolutional Neural Network Algorithms for Advancing Sedentary and Activity Bout Classification.

Supun Nakandala1, Marta M Jankowska2, Fatima Tuz-Zahra3, John Bellettiere3, Jordan A Carlson4, Andrea Z LaCroix3, Sheri J Hartman3, Dori E Rosenberg5, Jingjing Zou3, Arun Kumar1, Loki Natarajan3.   

Abstract

BACKGROUND: Machine learning has been used for classification of physical behavior bouts from hip-worn accelerometers; however, this research has been limited due to the challenges of directly observing and coding human behavior "in the wild." Deep learning algorithms, such as convolutional neural networks (CNNs), may offer better representation of data than other machine learning algorithms without the need for engineered features and may be better suited to dealing with free-living data. The purpose of this study was to develop a modeling pipeline for evaluation of a CNN model on a free-living data set and compare CNN inputs and results with the commonly used machine learning random forest and logistic regression algorithms.
METHOD: Twenty-eight free-living women wore an ActiGraph GT3X+accelerometer on their right hip for 7 days. A concurrently worn thigh-mounted activPAL device captured ground truth activity labels. The authors evaluated logistic regression, random forest, and CNN models for classifying sitting, standing, and stepping bouts. The authors also assessed the benefit of performing feature engineering for this task.
RESULTS: The CNN classifier performed best (average balanced accuracy for bout classification of sitting, standing, and stepping was 84%) compared with the other methods (56% for logistic regression and 76% for random forest), even without performing any feature engineering.
CONCLUSION: Using the recent advancements in deep neural networks, the authors showed that a CNN model can outperform other methods even without feature engineering. This has important implications for both the model's ability to deal with the complexity of free-living data and its potential transferability to new populations.

Entities:  

Keywords:  ActiGraph; activPAL; activity classification; feature engineering; free living

Year:  2021        PMID: 34458688      PMCID: PMC8389343          DOI: 10.1123/jmpb.2020-0016

Source DB:  PubMed          Journal:  J Meas Phys Behav        ISSN: 2575-6605


  20 in total

1.  A random forest classifier for the prediction of energy expenditure and type of physical activity from wrist and hip accelerometers.

Authors:  Katherine Ellis; Jacqueline Kerr; Suneeta Godbole; Gert Lanckriet; David Wing; Simon Marshall
Journal:  Physiol Meas       Date:  2014-10-23       Impact factor: 2.833

2.  Sedentary Behaviors and Biomarkers Among Breast Cancer Survivors.

Authors:  Sheri J Hartman; Catherine R Marinac; Lisa Cadmus-Bertram; Jacqueline Kerr; Loki Natarajan; Suneeta Godbole; Ruth E Patterson; Brittany Morey; Dorothy D Sears
Journal:  J Phys Act Health       Date:  2017-09-14

3.  Assessment of wear/nonwear time classification algorithms for triaxial accelerometer.

Authors:  Leena Choi; Suzanne Capen Ward; John F Schnelle; Maciej S Buchowski
Journal:  Med Sci Sports Exerc       Date:  2012-10       Impact factor: 5.411

4.  Day-level sedentary pattern estimates derived from hip-worn accelerometer cut-points in 8-12-year-olds: Do they reflect postural transitions?

Authors:  Jordan A Carlson; John Bellettiere; Jacqueline Kerr; Jo Salmon; Anna Timperio; Simone J J M Verswijveren; Nicola D Ridgers
Journal:  J Sports Sci       Date:  2019-04-19       Impact factor: 3.337

5.  Sedentary Behavior and Prevalent Diabetes in 6,166 Older Women: The Objective Physical Activity and Cardiovascular Health Study.

Authors:  John Bellettiere; Genevieve N Healy; Michael J LaMonte; Jacqueline Kerr; Kelly R Evenson; Eileen Rillamas-Sun; Chongzhi Di; David M Buchner; Melbourne F Hovell; Andrea Z LaCroix
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2019-02-15       Impact factor: 6.053

6.  Ability of thigh-worn ActiGraph and activPAL monitors to classify posture and motion.

Authors:  Jeremy A Steeves; Heather R Bowles; James J McClain; Kevin W Dodd; Robert J Brychta; Juan Wang; Kong Y Chen
Journal:  Med Sci Sports Exerc       Date:  2015-05       Impact factor: 5.411

7.  Performance of Activity Classification Algorithms in Free-Living Older Adults.

Authors:  Jeffer Eidi Sasaki; Amanda M Hickey; John W Staudenmayer; Dinesh John; Jane A Kent; Patty S Freedson
Journal:  Med Sci Sports Exerc       Date:  2016-05       Impact factor: 5.411

8.  Identifying Active Travel Behaviors in Challenging Environments Using GPS, Accelerometers, and Machine Learning Algorithms.

Authors:  Katherine Ellis; Suneeta Godbole; Simon Marshall; Gert Lanckriet; John Staudenmayer; Jacqueline Kerr
Journal:  Front Public Health       Date:  2014-04-22

9.  Ten-year change in sedentary behaviour, moderate-to-vigorous physical activity, cardiorespiratory fitness and cardiometabolic risk: independent associations and mediation analysis.

Authors:  Sara Knaeps; Jan G Bourgois; Ruben Charlier; Evelien Mertens; Johan Lefevre; Katrien Wijndaele
Journal:  Br J Sports Med       Date:  2016-08-04       Impact factor: 13.800

10.  Methods of Measurement in epidemiology: sedentary Behaviour.

Authors:  Andrew J Atkin; Trish Gorely; Stacy A Clemes; Thomas Yates; Charlotte Edwardson; Soren Brage; Jo Salmon; Simon J Marshall; Stuart J H Biddle
Journal:  Int J Epidemiol       Date:  2012-10       Impact factor: 7.196

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  4 in total

1.  The CNN Hip Accelerometer Posture (CHAP) Method for Classifying Sitting Patterns from Hip Accelerometers: A Validation Study.

Authors:  Mikael Anne Greenwood-Hickman; Supun Nakandala; Marta M Jankowska; Dori E Rosenberg; Fatima Tuz-Zahra; John Bellettiere; Jordan Carlson; Paul R Hibbing; Jingjing Zou; Andrea Z Lacroix; Arun Kumar; Loki Natarajan
Journal:  Med Sci Sports Exerc       Date:  2021-11-01

2.  Cohort profile: the Women's Health Accelerometry Collaboration.

Authors:  Kelly R Evenson; John Bellettiere; Carmen C Cuthbertson; Chongzhi Di; Rimma Dushkes; Annie Green Howard; Humberto Parada; Benjamin T Schumacher; Eric J Shiroma; Guangxing Wang; I-Min Lee; Andrea Z LaCroix
Journal:  BMJ Open       Date:  2021-11-29       Impact factor: 3.006

3.  Physical activity intensity profiles associated with cardiometabolic risk in middle-aged to older men and women.

Authors:  Paddy C Dempsey; Eivind Aadland; Tessa Strain; Olav M Kvalheim; Kate Westgate; Tim Lindsay; Kay-Tee Khaw; Nicholas J Wareham; Søren Brage; Katrien Wijndaele
Journal:  Prev Med       Date:  2022-02-04       Impact factor: 4.018

4.  CHAP-child: an open source method for estimating sit-to-stand transitions and sedentary bout patterns from hip accelerometers among children.

Authors:  Jordan A Carlson; Nicola D Ridgers; Supun Nakandala; Rong Zablocki; Fatima Tuz-Zahra; John Bellettiere; Paul R Hibbing; Chelsea Steel; Marta M Jankowska; Dori E Rosenberg; Mikael Anne Greenwood-Hickman; Jingjing Zou; Andrea Z LaCroix; Arun Kumar; Loki Natarajan
Journal:  Int J Behav Nutr Phys Act       Date:  2022-08-26       Impact factor: 8.915

  4 in total

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