Literature DB >> 34433962

The mutational landscape of human somatic and germline cells.

Luiza Moore1,2, Alex Cagan1, Tim H H Coorens1, Matthew D C Neville1, Rashesh Sanghvi1, Mathijs A Sanders1,3, Thomas R W Oliver1,2, Daniel Leongamornlert1, Peter Ellis1,4, Ayesha Noorani1, Thomas J Mitchell1,5, Timothy M Butler1, Yvette Hooks1, Anne Y Warren2, Mette Jorgensen6, Kevin J Dawson1, Andrew Menzies1, Laura O'Neill1, Calli Latimer1, Mabel Teng1, Ruben van Boxtel7, Christine A Iacobuzio-Donahue8,9, Inigo Martincorena1, Rakesh Heer10,11, Peter J Campbell1, Rebecca C Fitzgerald12, Michael R Stratton13, Raheleh Rahbari14.   

Abstract

Over the course of an individual's lifetime, normal human cells accumulate mutations1. Here we compare the mutational landscape in 29 cell types from the soma and germline using multiple samples from the same individuals. Two ubiquitous mutational signatures, SBS1 and SBS5/40, accounted for the majority of acquired mutations in most cell types, but their absolute and relative contributions varied substantially. SBS18, which potentially reflects oxidative damage2, and several additional signatures attributed to exogenous and endogenous exposures contributed mutations to subsets of cell types. The rate of mutation was lowest in spermatogonia, the stem cells from which sperm are generated and from which most genetic variation in the human population is thought to originate. This was due to low rates of ubiquitous mutational processes and may be partially attributable to a low rate of cell division in basal spermatogonia. These results highlight similarities and differences in the maintenance of the germline and soma.
© 2021. Crown.

Entities:  

Mesh:

Year:  2021        PMID: 34433962     DOI: 10.1038/s41586-021-03822-7

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   69.504


  55 in total

Review 1.  Somatic mutation in cancer and normal cells.

Authors:  Iñigo Martincorena; Peter J Campbell
Journal:  Science       Date:  2015-09-24       Impact factor: 47.728

2.  Detection of ultra-rare mutations by next-generation sequencing.

Authors:  Michael W Schmitt; Scott R Kennedy; Jesse J Salk; Edward J Fox; Joseph B Hiatt; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-01       Impact factor: 11.205

3.  The landscape of somatic mutation in normal colorectal epithelial cells.

Authors:  Henry Lee-Six; Sigurgeir Olafsson; Peter Ellis; Robert J Osborne; Mathijs A Sanders; Luiza Moore; Nikitas Georgakopoulos; Franco Torrente; Ayesha Noorani; Martin Goddard; Philip Robinson; Tim H H Coorens; Laura O'Neill; Christopher Alder; Jingwei Wang; Rebecca C Fitzgerald; Matthias Zilbauer; Nicholas Coleman; Kourosh Saeb-Parsy; Inigo Martincorena; Peter J Campbell; Michael R Stratton
Journal:  Nature       Date:  2019-10-23       Impact factor: 49.962

4.  Somatic Mutations Increase Hepatic Clonal Fitness and Regeneration in Chronic Liver Disease.

Authors:  Min Zhu; Tianshi Lu; Yuemeng Jia; Xin Luo; Purva Gopal; Lin Li; Mobolaji Odewole; Veronica Renteria; Amit G Singal; Younghoon Jang; Kai Ge; Sam C Wang; Mahsa Sorouri; Justin R Parekh; Malcolm P MacConmara; Adam C Yopp; Tao Wang; Hao Zhu
Journal:  Cell       Date:  2019-04-04       Impact factor: 41.582

5.  Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis.

Authors:  Taejeong Bae; Livia Tomasini; Jessica Mariani; Bo Zhou; Tanmoy Roychowdhury; Daniel Franjic; Mihovil Pletikos; Reenal Pattni; Bo-Juen Chen; Elisa Venturini; Bridget Riley-Gillis; Nenad Sestan; Alexander E Urban; Alexej Abyzov; Flora M Vaccarino
Journal:  Science       Date:  2017-12-07       Impact factor: 47.728

6.  The mutational landscape of normal human endometrial epithelium.

Authors:  Luiza Moore; Daniel Leongamornlert; Tim H H Coorens; Mathijs A Sanders; Peter Ellis; Stefan C Dentro; Kevin J Dawson; Tim Butler; Raheleh Rahbari; Thomas J Mitchell; Francesco Maura; Jyoti Nangalia; Patrick S Tarpey; Simon F Brunner; Henry Lee-Six; Yvette Hooks; Sarah Moody; Krishnaa T Mahbubani; Mercedes Jimenez-Linan; Jan J Brosens; Christine A Iacobuzio-Donahue; Inigo Martincorena; Kourosh Saeb-Parsy; Peter J Campbell; Michael R Stratton
Journal:  Nature       Date:  2020-04-22       Impact factor: 49.962

7.  Mutational History of a Human Cell Lineage from Somatic to Induced Pluripotent Stem Cells.

Authors:  Foad J Rouhani; Serena Nik-Zainal; Arthur Wuster; Yilong Li; Nathalie Conte; Hiroko Koike-Yusa; Natsuhiko Kumasaka; Ludovic Vallier; Kosuke Yusa; Allan Bradley
Journal:  PLoS Genet       Date:  2016-04-07       Impact factor: 5.917

8.  Somatic mutant clones colonize the human esophagus with age.

Authors:  Iñigo Martincorena; Joanna C Fowler; Agnieszka Wabik; Andrew R J Lawson; Federico Abascal; Michael W J Hall; Alex Cagan; Kasumi Murai; Krishnaa Mahbubani; Michael R Stratton; Rebecca C Fitzgerald; Penny A Handford; Peter J Campbell; Kourosh Saeb-Parsy; Philip H Jones
Journal:  Science       Date:  2018-10-18       Impact factor: 47.728

9.  Tissue-specific mutation accumulation in human adult stem cells during life.

Authors:  Francis Blokzijl; Joep de Ligt; Myrthe Jager; Valentina Sasselli; Sophie Roerink; Nobuo Sasaki; Meritxell Huch; Sander Boymans; Ewart Kuijk; Pjotr Prins; Isaac J Nijman; Inigo Martincorena; Michal Mokry; Caroline L Wiegerinck; Sabine Middendorp; Toshiro Sato; Gerald Schwank; Edward E S Nieuwenhuis; Monique M A Verstegen; Luc J W van der Laan; Jeroen de Jonge; Jan N M IJzermans; Robert G Vries; Marc van de Wetering; Michael R Stratton; Hans Clevers; Edwin Cuppen; Ruben van Boxtel
Journal:  Nature       Date:  2016-10-03       Impact factor: 49.962

10.  Somatic Mutations Reveal Lineage Relationships and Age-Related Mutagenesis in Human Hematopoiesis.

Authors:  Fernando G Osorio; Axel Rosendahl Huber; Rurika Oka; Mark Verheul; Sachin H Patel; Karlijn Hasaart; Lisanne de la Fonteijne; Ignacio Varela; Fernando D Camargo; Ruben van Boxtel
Journal:  Cell Rep       Date:  2018-11-27       Impact factor: 9.423

View more
  33 in total

Review 1.  Somatic Mutations in Cardiovascular Disease.

Authors:  J Brett Heimlich; Alexander G Bick
Journal:  Circ Res       Date:  2022-01-07       Impact factor: 17.367

2.  A paternal bias in germline mutation is widespread in amniotes and can arise independently of cell division numbers.

Authors:  Marc de Manuel; Felix L Wu; Molly Przeworski
Journal:  Elife       Date:  2022-08-02       Impact factor: 8.713

3.  Mutational Signatures Associate With Survival in Gastrointestinal Carcinomas.

Authors:  Peeter Karihtala; Katja Porvari; Outi Kilpivaara
Journal:  Cancer Genomics Proteomics       Date:  2022 Sep-Oct       Impact factor: 3.395

4.  Mutation fingerprints encode cellular histories.

Authors:  Kamila Naxerova
Journal:  Nature       Date:  2021-09       Impact factor: 69.504

5.  Genome-wide mapping of somatic mutation rates uncovers drivers of cancer.

Authors:  Maxwell A Sherman; Adam U Yaari; Oliver Priebe; Felix Dietlein; Po-Ru Loh; Bonnie Berger
Journal:  Nat Biotechnol       Date:  2022-06-20       Impact factor: 68.164

Review 6.  The Dynamics of Somatic Mutagenesis During Life in Humans.

Authors:  Freek Manders; Ruben van Boxtel; Sjors Middelkamp
Journal:  Front Aging       Date:  2021-12-17

7.  Inherited MUTYH mutations cause elevated somatic mutation rates and distinctive mutational signatures in normal human cells.

Authors:  Philip S Robinson; Laura E Thomas; Federico Abascal; Hyunchul Jung; Luke M R Harvey; Hannah D West; Sigurgeir Olafsson; Bernard C H Lee; Tim H H Coorens; Henry Lee-Six; Laura Butlin; Nicola Lander; Rebekah Truscott; Mathijs A Sanders; Stefanie V Lensing; Simon J A Buczacki; Rogier Ten Hoopen; Nicholas Coleman; Roxanne Brunton-Sim; Simon Rushbrook; Kourosh Saeb-Parsy; Fiona Lalloo; Peter J Campbell; Iñigo Martincorena; Julian R Sampson; Michael R Stratton
Journal:  Nat Commun       Date:  2022-07-08       Impact factor: 17.694

Review 8.  Cancer Risk and Mutational Patterns Following Organ Transplantation.

Authors:  Yangyang Shen; Di Lian; Kai Shi; Yuefeng Gao; Xiaoxiang Hu; Kun Yu; Qian Zhao; Chungang Feng
Journal:  Front Cell Dev Biol       Date:  2022-06-28

Review 9.  Genetic mosaicism in the human brain: from lineage tracing to neuropsychiatric disorders.

Authors:  Sara Bizzotto; Christopher A Walsh
Journal:  Nat Rev Neurosci       Date:  2022-03-23       Impact factor: 34.870

10.  Developmental and temporal characteristics of clonal sperm mosaicism.

Authors:  Xiaoxu Yang; Martin W Breuss; Xin Xu; Danny Antaki; Kiely N James; Valentina Stanley; Laurel L Ball; Renee D George; Sara A Wirth; Beibei Cao; An Nguyen; Jennifer McEvoy-Venneri; Guoliang Chai; Shareef Nahas; Lucitia Van Der Kraan; Yan Ding; Jonathan Sebat; Joseph G Gleeson
Journal:  Cell       Date:  2021-08-12       Impact factor: 66.850

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.