Literature DB >> 34432274

Experimental MicroRNA Targeting Validation.

Bala Gür Dedeoğlu1, Senem Noyan2.   

Abstract

microRNAs (miRNAs) have recently been recognized as a new dimension of posttranscriptional regulation. It is well defined that most human protein-coding genes are regulated by one or more miRNAs. Therefore, it is crucial to identify genes targeted by the miRNAs to better understand their functions. Although bioinformatics tools have the ability to identify target candidates it is still essential to identify physiological targets by experimental approaches. Currently, the majority of miRNA-target experimental validation approaches assess the changes in target expression in mRNA or protein level upon miRNA upregulation or downregulation. Additionally, finding out direct physical interactions between miRNAs and their targets is also among the experimental techniques. In this chapter we reviewed the existing experimental techniques for miRNA target identification by considering their advantages and potential drawbacks.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Cross-linking and immunoprecipitation (CLIP); RNA immunoprecipitation (RIP); miRNA; miRNA–target interaction

Mesh:

Substances:

Year:  2022        PMID: 34432274     DOI: 10.1007/978-1-0716-1170-8_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  75 in total

Review 1.  Prediction of microRNA targets.

Authors:  Pierre Mazière; Anton J Enright
Journal:  Drug Discov Today       Date:  2007-04-26       Impact factor: 7.851

Review 2.  Functional aspects of animal microRNAs.

Authors:  A E Williams
Journal:  Cell Mol Life Sci       Date:  2008-02       Impact factor: 9.261

Review 3.  Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

Authors:  Witold Filipowicz; Suvendra N Bhattacharyya; Nahum Sonenberg
Journal:  Nat Rev Genet       Date:  2008-02       Impact factor: 53.242

4.  Computational and bioinformatics methods for microRNA gene prediction.

Authors:  Jens Allmer
Journal:  Methods Mol Biol       Date:  2014

5.  Computational methods for microRNA target prediction.

Authors:  Hamid Hamzeiy; Jens Allmer; Malik Yousef
Journal:  Methods Mol Biol       Date:  2014

Review 6.  MicroRNAs in neuronal function and dysfunction.

Authors:  Heh-In Im; Paul J Kenny
Journal:  Trends Neurosci       Date:  2012-03-19       Impact factor: 13.837

Review 7.  Genomic organization of microRNAs.

Authors:  Abigail F Olena; James G Patton
Journal:  J Cell Physiol       Date:  2010-03       Impact factor: 6.384

Review 8.  Mirtrons: microRNA biogenesis via splicing.

Authors:  Jakub O Westholm; Eric C Lai
Journal:  Biochimie       Date:  2011-06-21       Impact factor: 4.079

9.  Identification of mammalian microRNA host genes and transcription units.

Authors:  Antony Rodriguez; Sam Griffiths-Jones; Jennifer L Ashurst; Allan Bradley
Journal:  Genome Res       Date:  2004-09-13       Impact factor: 9.043

Review 10.  The microcosmos of cancer.

Authors:  Amaia Lujambio; Scott W Lowe
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

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