Literature DB >> 20020507

Genomic organization of microRNAs.

Abigail F Olena1, James G Patton.   

Abstract

microRNAs (miRNAs) are small ( approximately 22 nt) noncoding RNAs that have been shown to regulate gene expression post-transcriptionally. They function by pairing with the 3' UTR of target mRNAs and repressing translation or by targeting the mRNA for degradation. miRNAs are involved in diverse aspects of development, maintenance, and disease, and are largely evolutionarily conserved in metazoans. Searching the genomes of organisms from viruses to worms to humans has revealed potentially thousands of miRNA genes. Understanding the patterns of genomic organization between species cannot only help to refine tools to identify new miRNAs, but also provide insight into miRNA biogenesis and function.

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Year:  2010        PMID: 20020507      PMCID: PMC4028663          DOI: 10.1002/jcp.21993

Source DB:  PubMed          Journal:  J Cell Physiol        ISSN: 0021-9541            Impact factor:   6.384


  85 in total

1.  Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes.

Authors:  Scott Baskerville; David P Bartel
Journal:  RNA       Date:  2005-03       Impact factor: 4.942

2.  Elucidation of the small RNA component of the transcriptome.

Authors:  Cheng Lu; Shivakundan Singh Tej; Shujun Luo; Christian D Haudenschild; Blake C Meyers; Pamela J Green
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

3.  MicroRNA expression in zebrafish embryonic development.

Authors:  Erno Wienholds; Wigard P Kloosterman; Eric Miska; Ezequiel Alvarez-Saavedra; Eugene Berezikov; Ewart de Bruijn; H Robert Horvitz; Sakari Kauppinen; Ronald H A Plasterk
Journal:  Science       Date:  2005-05-26       Impact factor: 47.728

4.  TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing.

Authors:  Thimmaiah P Chendrimada; Richard I Gregory; Easwari Kumaraswamy; Jessica Norman; Neil Cooch; Kazuko Nishikura; Ramin Shiekhattar
Journal:  Nature       Date:  2005-06-22       Impact factor: 49.962

5.  TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing.

Authors:  Astrid D Haase; Lukasz Jaskiewicz; Haidi Zhang; Sébastien Lainé; Ragna Sack; Anne Gatignol; Witold Filipowicz
Journal:  EMBO Rep       Date:  2005-10       Impact factor: 8.807

6.  Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila.

Authors:  Feng Jiang; Xuecheng Ye; Xiang Liu; Lauren Fincher; Dennis McKearin; Qinghua Liu
Journal:  Genes Dev       Date:  2005-06-28       Impact factor: 11.361

7.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

8.  Normal microRNA maturation and germ-line stem cell maintenance requires Loquacious, a double-stranded RNA-binding domain protein.

Authors:  Klaus Förstemann; Yukihide Tomari; Tingting Du; Vasily V Vagin; Ahmet M Denli; Diana P Bratu; Carla Klattenhoff; William E Theurkauf; Phillip D Zamore
Journal:  PLoS Biol       Date:  2005-05-24       Impact factor: 8.029

9.  Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells.

Authors:  Kuniaki Saito; Akira Ishizuka; Haruhiko Siomi; Mikiko C Siomi
Journal:  PLoS Biol       Date:  2005-05-24       Impact factor: 8.029

10.  Principles of microRNA-target recognition.

Authors:  Julius Brennecke; Alexander Stark; Robert B Russell; Stephen M Cohen
Journal:  PLoS Biol       Date:  2005-03       Impact factor: 8.029

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  82 in total

1.  Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome.

Authors:  J K Greenberg; J Xia; X Zhou; S R Thatcher; X Gu; S A Ament; T C Newman; P J Green; W Zhang; G E Robinson; Y Ben-Shahar
Journal:  Genes Brain Behav       Date:  2012-04-06       Impact factor: 3.449

2.  Identification of microRNA-93 as a novel regulator of vascular endothelial growth factor in hyperglycemic conditions.

Authors:  Jianyin Long; Yin Wang; Wenjian Wang; Benny H J Chang; Farhad R Danesh
Journal:  J Biol Chem       Date:  2010-05-25       Impact factor: 5.157

Review 3.  MicroRNAs in skeletal myogenesis.

Authors:  Yejing Ge; Jie Chen
Journal:  Cell Cycle       Date:  2011-02-01       Impact factor: 4.534

Review 4.  microRNAs in kidneys: biogenesis, regulation, and pathophysiological roles.

Authors:  Kirti Bhatt; Qing-Sheng Mi; Zheng Dong
Journal:  Am J Physiol Renal Physiol       Date:  2011-01-12

5.  Genomewide analysis of intronic microRNAs in rice and Arabidopsis.

Authors:  G D Yang; K Yan; B J Wu; Y H Wang; Y X Gao; C C Zheng
Journal:  J Genet       Date:  2012       Impact factor: 1.166

6.  MicroRNAs 185, 96, and 223 repress selective high-density lipoprotein cholesterol uptake through posttranscriptional inhibition.

Authors:  Li Wang; Xiao-Jian Jia; Hua-Jun Jiang; Yu Du; Fan Yang; Shu-Yi Si; Bin Hong
Journal:  Mol Cell Biol       Date:  2013-03-04       Impact factor: 4.272

7.  Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1).

Authors:  Mohamed Samir; Ramon O Vidal; Fatma Abdallah; Vincenzo Capece; Frauke Seehusen; Robert Geffers; Ashraf Hussein; Ahmed A H Ali; Stefan Bonn; Frank Pessler
Journal:  RNA Biol       Date:  2019-10-04       Impact factor: 4.652

Review 8.  Good or not good: Role of miR-18a in cancer biology.

Authors:  Tomasz Kolenda; Kacper Guglas; Magda Kopczyńska; Joanna Sobocińska; Anna Teresiak; Renata Bliźniak; Katarzyna Lamperska
Journal:  Rep Pract Oncol Radiother       Date:  2020-08-12

9.  miR-146a suppresses STAT3/VEGF pathways and reduces apoptosis through IL-6 signaling in primary human retinal microvascular endothelial cells in high glucose conditions.

Authors:  Eun-Ah Ye; Jena J Steinle
Journal:  Vision Res       Date:  2017-04-26       Impact factor: 1.886

10.  miR-24 regulates apoptosis by targeting the open reading frame (ORF) region of FAF1 in cancer cells.

Authors:  Wenming Qin; Yi Shi; Botao Zhao; Chengguo Yao; Li Jin; Jiexian Ma; Youxin Jin
Journal:  PLoS One       Date:  2010-02-25       Impact factor: 3.240

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