Literature DB >> 34432183

A molecular dynamics study of protein denaturation induced by sulfonate-based surfactants.

Armen H Poghosyan1, Aram A Shahinyan2, Gayane R Kirakosyan3, Naira M Ayvazyan3, Yevgeni S Mamasakhlisov4, Garegin A Papoian5.   

Abstract

Microsecond timescale explicit-solvent atomistic simulations were carried out to investigate how anionic surfactants modulate protein structure and dynamics. We found that lysozyme undergoes near-complete denaturation at the high concentration (> 0.1 M) of sodium pentadecyl sulfonate (SPDS), while only partial denaturation occurs at the concentration slightly below 0.1 M. In large part, protein denaturation is structurally manifested by disappearance of helical segments and loss of tertiary interactions. The computational prediction of the extent of burial of cysteine residues was experimentally validated by measuring the accessibility of the respective sulfhydryl groups. Overall, our work indicates an interesting synergy between electrostatic and hydrophobic contributions to lysozyme's denaturation process by anionic surfactants. In fact, first disulfide bridges and hydrogen bonds from protein surface to SPDS head groups loosen the protein globule followed by fuller denaturation via insertion of the surfactant's hydrophobic tails into the protein core.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Molecular dynamics; Molten globule; Protein denaturation; Protein/surfactant interaction; Unfolding mechanism

Mesh:

Substances:

Year:  2021        PMID: 34432183     DOI: 10.1007/s00894-021-04882-2

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  32 in total

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Journal:  Biochemistry       Date:  1992-09-01       Impact factor: 3.162

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Journal:  Biochim Biophys Acta       Date:  2011-03-22

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Journal:  Biochemistry       Date:  1977-04-05       Impact factor: 3.162

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Authors:  J Tirado-Rives; W L Jorgensen
Journal:  Biochemistry       Date:  1993-04-27       Impact factor: 3.162

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Authors:  D B Wetlaufer; Y Xie
Journal:  Protein Sci       Date:  1995-08       Impact factor: 6.725

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Authors:  A Caflisch; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-01       Impact factor: 11.205

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Journal:  Q Rev Biophys       Date:  1983-02       Impact factor: 5.318

9.  Abnormal SDS-PAGE migration of cytosolic proteins can identify domains and mechanisms that control surfactant binding.

Authors:  Yunhua Shi; Richard A Mowery; Jonathan Ashley; Michelle Hentz; Alejandro J Ramirez; Basar Bilgicer; Hilda Slunt-Brown; David R Borchelt; Bryan F Shaw
Journal:  Protein Sci       Date:  2012-08       Impact factor: 6.725

10.  Molecular dynamics study of ACBP denaturation in alkyl sulfates demonstrates possible pathways of unfolding through fused surfactant clusters.

Authors:  Armen H Poghosyan; Nicholas P Schafer; Jeppe Lyngsø; Aram A Shahinyan; Jan Skov Pedersen; Daniel E Otzen
Journal:  Protein Eng Des Sel       Date:  2019-12-31       Impact factor: 1.650

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