Literature DB >> 1510961

Simulation of the thermal denaturation of hen egg white lysozyme: trapping the molten globule state.

A E Mark1, W F van Gunsteren.   

Abstract

In the study of protein folding, much attention has focused on the characterization of folding intermediates. We report here molecular dynamics simulations in which the initial stages of the thermal denaturation of hen egg white lysozyme in aqueous solution are examined in detail. It is found that lysozyme unfolds in a two-stage process with the initial formation a quasi-stable state in which significant rearrangement of the secondary structure takes place. No evidence for distinct folding domains was found. The simulations suggest that the formation of well-defined secondary structure occurs after the initial collapse of the peptide chain and thus tend against the framework model of protein folding.

Entities:  

Mesh:

Substances:

Year:  1992        PMID: 1510961     DOI: 10.1021/bi00149a001

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

1.  Reversibility and hierarchy of thermal transition of hen egg-white lysozyme studied by small-angle x-ray scattering.

Authors:  S Arai; M Hirai
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

2.  Simulations of human lysozyme: probing the conformations triggering amyloidosis.

Authors:  George Moraitakis; Julia M Goodfellow
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

3.  Molecular dynamics as a tool to detect protein foldability. A mutant of domain B1 of protein G with non-native secondary structure propensities.

Authors:  D Cregut; L Serrano
Journal:  Protein Sci       Date:  1999-02       Impact factor: 6.725

4.  Dynamics of lysozyme structure network: probing the process of unfolding.

Authors:  Amit Ghosh; K V Brinda; Saraswathi Vishveshwara
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

5.  On the temperature and pressure dependence of a range of properties of a type of water model commonly used in high-temperature protein unfolding simulations.

Authors:  R Walser; A E Mark; W F van Gunsteren
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

6.  Dynamics and unfolding pathways of a hyperthermophilic and a mesophilic rubredoxin.

Authors:  T Lazaridis; I Lee; M Karplus
Journal:  Protein Sci       Date:  1997-12       Impact factor: 6.725

7.  Dynamics of ribonuclease A and ribonuclease S: computational and experimental studies.

Authors:  G Nadig; G S Ratnaparkhi; R Varadarajan; S Vishveshwara
Journal:  Protein Sci       Date:  1996-10       Impact factor: 6.725

8.  Molecular dynamics simulations of hydrophobic collapse of ubiquitin.

Authors:  D O Alonso; V Daggett
Journal:  Protein Sci       Date:  1998-04       Impact factor: 6.725

9.  Molecular modeling of the RNA binding N-terminal part of cowpea chlorotic mottle virus coat protein in solution with phosphate ions.

Authors:  D van der Spoel; K A Feenstra; M A Hemminga; H J Berendsen
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

10.  Exploring the folding free energy surface of a three-helix bundle protein.

Authors:  Z Guo; C L Brooks; E M Boczko
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-16       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.