Literature DB >> 34415310

Biallelic PI4KA variants cause neurological, intestinal and immunological disease.

Claire G Salter1,2, Yiying Cai3,4,5,6, Bernice Lo7,8, Guy Helman9,10, Henry Taylor11, Amber McCartney3,4,5,6, Joseph S Leslie1, Andrea Accogli12, Federico Zara12, Monica Traverso12, James Fasham1,13, Joshua A Lees4, Matteo P Ferla14, Barry A Chioza1, Olivia Wenger15, Ethan Scott15, Harold E Cross16, Joanna Crawford10, Ilka Warshawsky17, Matthew Keisling17, Dimitris Agamanolis17, Catherine Ward Melver17, Helen Cox18, Mamoun Elawad19, Tamas Marton20, Matthew N Wakeling1, Dirk Holzinger21, Stephan Tippelt21, Martin Munteanu22, Deyana Valcheva23, Christin Deal24, Sara Van Meerbeke24, Catherine Walsh Vockley25, Manish J Butte26, Utkucan Acar26, Marjo S van der Knaap27,28, G Christoph Korenke29, Urania Kotzaeridou30, Tamas Balla31, Cas Simons9,10, Holm H Uhlig32,33,34, Andrew H Crosby1, Pietro De Camilli3,4,5,6,35, Nicole I Wolf27,28, Emma L Baple1,13.   

Abstract

Phosphatidylinositol 4-kinase IIIα (PI4KIIIα/PI4KA/OMIM:600286) is a lipid kinase generating phosphatidylinositol 4-phosphate (PI4P), a membrane phospholipid with critical roles in the physiology of multiple cell types. PI4KIIIα's role in PI4P generation requires its assembly into a heterotetrameric complex with EFR3, TTC7 and FAM126. Sequence alterations in two of these molecular partners, TTC7 (encoded by TTC7A or TCC7B) and FAM126, have been associated with a heterogeneous group of either neurological (FAM126A) or intestinal and immunological (TTC7A) conditions. Here we show that biallelic PI4KA sequence alterations in humans are associated with neurological disease, in particular hypomyelinating leukodystrophy. In addition, affected individuals may present with inflammatory bowel disease, multiple intestinal atresia and combined immunodeficiency. Our cellular, biochemical and structural modelling studies indicate that PI4KA-associated phenotypical outcomes probably stem from impairment of PI4KIIIα-TTC7-FAM126's organ-specific functions, due to defective catalytic activity or altered intra-complex functional interactions. Together, these data define PI4KA gene alteration as a cause of a variable phenotypical spectrum and provide fundamental new insight into the combinatorial biology of the PI4KIIIα-FAM126-TTC7-EFR3 molecular complex.
© The Author(s) (2021). Published by Oxford University Press on behalf of the Guarantors of Brain.

Entities:  

Keywords:  zzm321990 PI4KAzzm321990 ; FAM126A; TTC7A; hypomyelinating leukodystrophy; multiple intestinal atresia

Mesh:

Substances:

Year:  2021        PMID: 34415310      PMCID: PMC8719846          DOI: 10.1093/brain/awab313

Source DB:  PubMed          Journal:  Brain        ISSN: 0006-8950            Impact factor:   15.255


  57 in total

1.  Proteomics. Tissue-based map of the human proteome.

Authors:  Mathias Uhlén; Linn Fagerberg; Björn M Hallström; Cecilia Lindskog; Per Oksvold; Adil Mardinoglu; Åsa Sivertsson; Caroline Kampf; Evelina Sjöstedt; Anna Asplund; IngMarie Olsson; Karolina Edlund; Emma Lundberg; Sanjay Navani; Cristina Al-Khalili Szigyarto; Jacob Odeberg; Dijana Djureinovic; Jenny Ottosson Takanen; Sophia Hober; Tove Alm; Per-Henrik Edqvist; Holger Berling; Hanna Tegel; Jan Mulder; Johan Rockberg; Peter Nilsson; Jochen M Schwenk; Marica Hamsten; Kalle von Feilitzen; Mattias Forsberg; Lukas Persson; Fredric Johansson; Martin Zwahlen; Gunnar von Heijne; Jens Nielsen; Fredrik Pontén
Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

2.  Stem cell transplantation for tetratricopeptide repeat domain 7A deficiency: long-term follow-up.

Authors:  Jochen Kammermeier; Giovanna Lucchini; Sung-Yun Pai; Austen Worth; Dyanne Rampling; Persis Amrolia; Juliana Silva; Robert Chiesa; Kanchan Rao; Gabriele Noble-Jamieson; Marco Gasparetto; Drew Ellershaw; Holm Uhlig; Neil Sebire; Mamoun Elawad; Luigi Notarangelo; Neil Shah; Paul Veys
Journal:  Blood       Date:  2016-07-14       Impact factor: 22.113

3.  Mutations in tetratricopeptide repeat domain 7A result in a severe form of very early onset inflammatory bowel disease.

Authors:  Yaron Avitzur; Conghui Guo; Lucas A Mastropaolo; Ehsan Bahrami; Hannah Chen; Zhen Zhao; Abdul Elkadri; Sandeep Dhillon; Ryan Murchie; Ramzi Fattouh; Hien Huynh; Jennifer L Walker; Paul W Wales; Ernest Cutz; Yoichi Kakuta; Joel Dudley; Jochen Kammermeier; Fiona Powrie; Neil Shah; Christoph Walz; Michaela Nathrath; Daniel Kotlarz; Jacek Puchaka; Jonathan R Krieger; Tomas Racek; Thomas Kirchner; Thomas D Walters; John H Brumell; Anne M Griffiths; Nima Rezaei; Parisa Rashtian; Mehri Najafi; Maryam Monajemzadeh; Stephen Pelsue; Dermot P B McGovern; Holm H Uhlig; Eric Schadt; Christoph Klein; Scott B Snapper; Aleixo M Muise
Journal:  Gastroenterology       Date:  2014-01-11       Impact factor: 22.682

4.  Hypomyelinating leukodystrophy-associated missense mutant of FAM126A/hyccin/DRCTNNB1A aggregates in the endoplasmic reticulum.

Authors:  Yuki Miyamoto; Tomohiro Torii; Takahiro Eguchi; Kazuaki Nakamura; Akito Tanoue; Junji Yamauchi
Journal:  J Clin Neurosci       Date:  2013-11-14       Impact factor: 1.961

5.  Architecture of the human PI4KIIIα lipid kinase complex.

Authors:  Joshua A Lees; Yixiao Zhang; Michael S Oh; Curtis M Schauder; Xiaoling Yu; Jeremy M Baskin; Kerry Dobbs; Luigi D Notarangelo; Pietro De Camilli; Thomas Walz; Karin M Reinisch
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-11       Impact factor: 11.205

6.  Probing the Architecture, Dynamics, and Inhibition of the PI4KIIIα/TTC7/FAM126 Complex.

Authors:  Gillian L Dornan; Udit Dalwadi; David J Hamelin; Reece M Hoffmann; Calvin K Yip; John E Burke
Journal:  J Mol Biol       Date:  2018-07-18       Impact factor: 5.469

Review 7.  Hypomyelinating leukodystrophies - unravelling myelin biology.

Authors:  Nicole I Wolf; Charles Ffrench-Constant; Marjo S van der Knaap
Journal:  Nat Rev Neurol       Date:  2020-12-15       Impact factor: 42.937

8.  Functionally distinct PI 3-kinase pathways regulate myelination in the peripheral nervous system.

Authors:  Bradley A Heller; Monica Ghidinelli; Jakob Voelkl; Steven Einheber; Ryan Smith; Ethan Grund; Grant Morahan; David Chandler; Luba Kalaydjieva; Filippo Giancotti; Rosalind H King; Aniko Naray Fejes-Toth; Gerard Fejes-Toth; Maria Laura Feltri; Florian Lang; James L Salzer
Journal:  J Cell Biol       Date:  2014-03-31       Impact factor: 10.539

9.  Diagnosis of lethal or prenatal-onset autosomal recessive disorders by parental exome sequencing.

Authors:  Karen L Stals; Matthew Wakeling; Júlia Baptista; Richard Caswell; Andrew Parrish; Julia Rankin; Carolyn Tysoe; Garan Jones; Adam C Gunning; Hana Lango Allen; Lisa Bradley; Angela F Brady; Helena Carley; Jenny Carmichael; Bruce Castle; Deirdre Cilliers; Helen Cox; Charu Deshpande; Abhijit Dixit; Jacqueline Eason; Frances Elmslie; Andrew E Fry; Alan Fryer; Muriel Holder; Tessa Homfray; Emma Kivuva; Victoria McKay; Ruth Newbury-Ecob; Michael Parker; Ravi Savarirayan; Claire Searle; Nora Shannon; Deborah Shears; Sarah Smithson; Ellen Thomas; Peter D Turnpenny; Vinod Varghese; Pradeep Vasudevan; Emma Wakeling; Emma L Baple; Sian Ellard
Journal:  Prenat Diagn       Date:  2017-12-03       Impact factor: 3.050

Review 10.  The diagnostic approach to monogenic very early onset inflammatory bowel disease.

Authors:  Holm H Uhlig; Tobias Schwerd; Sibylle Koletzko; Neil Shah; Jochen Kammermeier; Abdul Elkadri; Jodie Ouahed; David C Wilson; Simon P Travis; Dan Turner; Christoph Klein; Scott B Snapper; Aleixo M Muise
Journal:  Gastroenterology       Date:  2014-07-21       Impact factor: 33.883

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  5 in total

Review 1.  Monogenic inflammatory bowel disease-genetic variants, functional mechanisms and personalised medicine in clinical practice.

Authors:  Aline Azabdaftari; Kelsey D J Jones; Jochen Kammermeier; Holm H Uhlig
Journal:  Hum Genet       Date:  2022-06-28       Impact factor: 4.132

2.  A palmitoylation code controls PI4KIIIα complex formation and PI(4,5)P2 homeostasis at the plasma membrane.

Authors:  Alex G Batrouni; Nirmalya Bag; Henry T Phan; Barbara A Baird; Jeremy M Baskin
Journal:  J Cell Sci       Date:  2021-10-22       Impact factor: 5.235

3.  Diagnosis of Genetic White Matter Disorders by Singleton Whole-Exome and Genome Sequencing Using Interactome-Driven Prioritization.

Authors:  Agatha Schlüter; Agustí Rodríguez-Palmero; Edgard Verdura; Valentina Vélez-Santamaría; Montserrat Ruiz; Stéphane Fourcade; Laura Planas-Serra; Juan José Martínez; Cristina Guilera; Marisa Girós; Rafael Artuch; María Eugenia Yoldi; Mar O'Callaghan; Angels García-Cazorla; Judith Armstrong; Itxaso Marti; Elisabet Mondragón Rezola; Claire Redin; Jean Louis Mandel; David Conejo; Concepción Sierra-Córcoles; Sergi Beltrán; Marta Gut; Elida Vázquez; Mireia Del Toro; Mónica Troncoso; Luis A Pérez-Jurado; Luis G Gutiérrez-Solana; Adolfo López de Munain; Carlos Casasnovas; Sergio Aguilera-Albesa; Alfons Macaya; Aurora Pujol
Journal:  Neurology       Date:  2022-01-10       Impact factor: 9.910

4.  Association of rare variants in genes of immune regulation with pediatric autoimmune CNS diseases.

Authors:  Saba Jafarpour; Abhik Banerjee; Natalie K Boyd; Benjamin N Vogel; Kelli C Paulsen; Nusrat Ahsan; Wendy G Mitchell; Shafali S Jeste; Jonathan D Santoro
Journal:  J Neurol       Date:  2022-08-12       Impact factor: 6.682

5.  PI4K2A deficiency causes innate error in intracellular trafficking with developmental and epileptic-dyskinetic encephalopathy.

Authors:  Hormos Salimi Dafsari; Joshua G Pemberton; Elizabeth A Ferrer; Tony Yammine; Chantal Farra; Mohammad Hasan Mohammadi; Ehsan Ghayoor Karimiani; Narges Hashemi; Mirna Souaid; Sandra Sabbagh; Paria Najarzadeh Torbati; Suliman Khan; Emmanuel Roze; Andres Moreno-De-Luca; Aida M Bertoli-Avella; Henry Houlden; Tamas Balla; Reza Maroofian
Journal:  Ann Clin Transl Neurol       Date:  2022-07-25       Impact factor: 5.430

  5 in total

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