Literature DB >> 34414423

Sample Processing and Stability for Urine Biomarker Studies.

Crystal Chang1, Wassim Obeid1, Heather Thiessen-Philbrook1, Chirag R Parikh1.   

Abstract

BACKGROUND: Current methods of processing and storing urine samples have not been compared systematically to determine optimal conditions for advancing research on urinary biomarkers. Often, preanalytical handling is nonideal, especially considering the COVID-19 pandemic; consequently, we compared the effects of different short-term storage and processing methods on urinary biomarker measurements.
METHODS: Spot urine samples were collected via a Foley catheter from 20 hospitalized patients from the Yale New Haven Hospital within 48 hours postcardiac surgery. The effects of 3 urine storage and processing methods on biomarkers were tested: (a) 48-hour temporary storage at 4 °C prior to freezing at -80 °C, (b) 48-hour temporary storage at 25 °C prior to freezing at -80 °C, and (c) no centrifugation and immediate storage at -80 °C. Established Meso-Scale Device assay methods were used to measure the urine concentrations of 18 biomarkers: interferon gamma (IFN-ɣ), interleukin (IL)-10, IL-12p70, IL-13, IL-1β, IL-2, IL-4, IL-6, IL-8, IL-18, tumor necrosis factor alpha (TNF-α), epidermal growth factor (EGF), neutrophil gelatinase-associated lipocalin (NGAL), osteopontin (OPN), uromodulin (UMOD), kidney injury molecule-1 (KIM-1), monocyte chemoattractant protein-1 (MCP-1), and chitinase-3-like protein 1 (YKL-40).
RESULTS: Measurements of most biomarkers investigated remained stable after temporary storage at 4 °C. IL-6, IL-8, KIM-1, MCP-1, YKL-40, EGF, and NGAL were stable across all 3 processing conditions. IL-12p70 and IL-4 demonstrated significant differences in all tested conditions compared to the reference standard.
CONCLUSIONS: We identified several notable biomarkers that are robust to variations in preanalytical techniques and can be reliably investigated with nonideal handling conditions. © American Association for Clinical Chemistry 2021. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  acute kidney injury; biospecimen handling; biospecimen storage; protein stability; urinalysis

Mesh:

Substances:

Year:  2021        PMID: 34414423      PMCID: PMC8561784          DOI: 10.1093/jalm/jfab082

Source DB:  PubMed          Journal:  J Appl Lab Med        ISSN: 2475-7241


  9 in total

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Authors:  Chirag R Parikh; Isabel Butrymowicz; Angela Yu; Vernon M Chinchilli; Meyeon Park; Chi-Yuan Hsu; W Brian Reeves; Prasad Devarajan; Paul L Kimmel; Edward D Siew; Kathleen D Liu
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5.  Evaluation of the ARCHITECT urine NGAL assay: assay performance, specimen handling requirements and biological variability.

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6.  Determination of uromodulin in human urine: influence of storage and processing.

Authors:  Sonia Youhanna; Julien Weber; Viviane Beaujean; Bob Glaudemans; Jens Sobek; Olivier Devuyst
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7.  Recommendations on Acute Kidney Injury Biomarkers From the Acute Disease Quality Initiative Consensus Conference: A Consensus Statement.

Authors:  Marlies Ostermann; Alexander Zarbock; Stuart Goldstein; Kianoush Kashani; Etienne Macedo; Raghavan Murugan; Max Bell; Lui Forni; Louis Guzzi; Michael Joannidis; Sandra L Kane-Gill; Mathieu Legrand; Ravindra Mehta; Patrick T Murray; Peter Pickkers; Mario Plebani; John Prowle; Zaccaria Ricci; Thomas Rimmelé; Mitchell Rosner; Andrew D Shaw; John A Kellum; Claudio Ronco
Journal:  JAMA Netw Open       Date:  2020-10-01

8.  Effect of long-term storage of urine samples on measurement of kidney injury molecule 1 (KIM-1) and neutrophil gelatinase-associated lipocalin (NGAL).

Authors:  Mathijs van de Vrie; Jeroen K Deegens; Johan van der Vlag; Luuk B Hilbrands
Journal:  Am J Kidney Dis       Date:  2013-11-21       Impact factor: 8.860

9.  Tertiary and quaternary structural basis of oxygen affinity in human hemoglobin as revealed by multiscale simulations.

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  9 in total
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1.  Stability of novel urinary biomarkers used for lupus nephritis.

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  1 in total

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