Literature DB >> 34402499

Insight into the function of active site residues in the catalytic mechanism of human ferrochelatase.

Amy E Medlock1,2, Wided Najahi-Missaoui1, Mesafint T Shiferaw1, Angela N Albetel3, William N Lanzilotta1,3, Harry A Dailey1,4.   

Abstract

Ferrochelatase catalyzes the insertion of ferrous iron into a porphyrin macrocycle to produce the essential cofactor, heme. In humans this enzyme not only catalyzes the terminal step, but also serves a regulatory step in the heme synthesis pathway. Over a dozen crystal structures of human ferrochelatase have been solved and many variants have been characterized kinetically. In addition, hydrogen deuterium exchange, resonance Raman, molecular dynamics, and high level quantum mechanic studies have added to our understanding of the catalytic cycle of the enzyme. However, an understanding of how the metal ion is delivered and the specific role that active site residues play in catalysis remain open questions. Data are consistent with metal binding and insertion occurring from the side opposite from where pyrrole proton abstraction takes place. To better understand iron delivery and binding as well as the role of conserved residues in the active site, we have constructed and characterized a series of enzyme variants. Crystallographic studies as well as rescue and kinetic analysis of variants were performed. Data from these studies are consistent with the M76 residue playing a role in active site metal binding and formation of a weak iron protein ligand being necessary for product release. Additionally, structural data support a role for E343 in proton abstraction and product release in coordination with a peptide loop composed of Q302, S303 and K304 that act a metal sensor.
© 2021 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  ferrochelatase; heme; heme synthesis; iron

Mesh:

Substances:

Year:  2021        PMID: 34402499      PMCID: PMC9138182          DOI: 10.1042/BCJ20210460

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.766


  44 in total

1.  Erythropoietin signaling regulates heme biosynthesis.

Authors:  Jacky Chung; Johannes G Wittig; Alireza Ghamari; Manami Maeda; Tamara A Dailey; Hector Bergonia; Martin D Kafina; Emma E Coughlin; Catherine E Minogue; Alexander S Hebert; Liangtao Li; Jerry Kaplan; Harvey F Lodish; Daniel E Bauer; Stuart H Orkin; Alan B Cantor; Takahiro Maeda; John D Phillips; Joshua J Coon; David J Pagliarini; Harry A Dailey; Barry H Paw
Journal:  Elife       Date:  2017-05-29       Impact factor: 8.140

2.  Porphyrin-substrate binding to murine ferrochelatase: effect on the thermal stability of the enzyme.

Authors:  Ricardo Franco; Guangyue Bai; Vesna Prosinecki; Filipa Abrunhosa; Gloria C Ferreira; Margarida Bastos
Journal:  Biochem J       Date:  2005-03-15       Impact factor: 3.857

3.  The 2.0 A structure of human ferrochelatase, the terminal enzyme of heme biosynthesis.

Authors:  C K Wu; H A Dailey; J P Rose; A Burden; V M Sellers; B C Wang
Journal:  Nat Struct Biol       Date:  2001-02

4.  Investigation by MD simulation of the key residues related to substrate-binding and heme-release in human ferrochelatase.

Authors:  Yaxue Wang; Jingheng Wu; Jinqian Ju; Yong Shen
Journal:  J Mol Model       Date:  2013-02-28       Impact factor: 1.810

5.  Product release rather than chelation determines metal specificity for ferrochelatase.

Authors:  Amy E Medlock; Michael Carter; Tamara A Dailey; Harry A Dailey; William N Lanzilotta
Journal:  J Mol Biol       Date:  2009-08-22       Impact factor: 5.469

6.  A pi-helix switch selective for porphyrin deprotonation and product release in human ferrochelatase.

Authors:  Amy E Medlock; Tamara A Dailey; Teresa A Ross; Harry A Dailey; William N Lanzilotta
Journal:  J Mol Biol       Date:  2007-08-23       Impact factor: 5.469

7.  Bovine ferrochelatase. Kinetic analysis of inhibition by N-methylprotoporphyrin, manganese, and heme.

Authors:  H A Dailey; J E Fleming
Journal:  J Biol Chem       Date:  1983-10-10       Impact factor: 5.157

8.  Recognition of anionic porphyrins by DNA aptamers.

Authors:  Y Li; C R Geyer; D Sen
Journal:  Biochemistry       Date:  1996-05-28       Impact factor: 3.162

9.  The cooperative effect between active site ionized groups and water desolvation controls the alteration of acid/base catalysis in serine proteases.

Authors:  Michael Shokhen; Netaly Khazanov; Amnon Albeck
Journal:  Chembiochem       Date:  2007-08-13       Impact factor: 3.164

10.  Structural analysis of heme proteins: implications for design and prediction.

Authors:  Ting Li; Herbert L Bonkovsky; Jun-tao Guo
Journal:  BMC Struct Biol       Date:  2011-03-03
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  2 in total

Review 1.  Ferrochelatase: Mapping the Intersection of Iron and Porphyrin Metabolism in the Mitochondria.

Authors:  Chibuike David Obi; Tawhid Bhuiyan; Harry A Dailey; Amy E Medlock
Journal:  Front Cell Dev Biol       Date:  2022-05-12

Review 2.  Iron, Heme Synthesis and Erythropoietic Porphyrias: A Complex Interplay.

Authors:  Antoine Poli; Caroline Schmitt; Boualem Moulouel; Arienne Mirmiran; Hervé Puy; Thibaud Lefèbvre; Laurent Gouya
Journal:  Metabolites       Date:  2021-11-23
  2 in total

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