| Literature DB >> 34393475 |
Asif Afzal1, C Ahamed Saleel2, Suvanjan Bhattacharyya3, N Satish4, Olusegun David Samuel5,6, Irfan Anjum Badruddin2.
Abstract
Mathematical models have assisted in describing the transmission and propagation dynamics of various viral diseases like MERS, measles, SARS, and Influenza; while the advanced computational technique is utilized in the epidemiology of viral diseases to examine and estimate the influences of interventions and vaccinations. In March 2020, the World Health Organization (WHO) has declared the COVID-19 as a global pandemic and the rate of morbidity and mortality triggers unprecedented public health crises throughout the world. The mathematical models can assist in improving the interventions, key transmission parameters, public health agencies, and countermeasures to mitigate this pandemic. Besides, the mathematical models were also used to examine the characteristics of epidemiological and the understanding of the complex transmission mechanism. Our literature study found that there were still some challenges in mathematical modeling for the case of ecology, genetics, microbiology, and pathology pose; also, some aspects like political and societal issues and cultural and ethical standards are hard to be characterized. Here, the recent mathematical models about COVID-19 and their prominent features, applications, limitations, and future perspective are discussed and reviewed. This review can assist in further improvement of mathematical models that will consider the current challenges of viral diseases. © CIMNE, Barcelona, Spain 2021.Entities:
Year: 2021 PMID: 34393475 PMCID: PMC8356220 DOI: 10.1007/s11831-021-09634-2
Source DB: PubMed Journal: Arch Comput Methods Eng ISSN: 1134-3060 Impact factor: 8.171
Different mathematical models adopted for modelling of COVID-19
| Model | COVID-19 studies | References |
|---|---|---|
| Ordinary and partial differential equations (ODE and PDE) | Modelling the dynamics of spread, infections, and deaths | [ |
| Susceptible-exposed-infected-recovered (SEIR) | Dynamics, prediction, management strategies, Effect of temperature and humidity levels | [ |
| Susceptible-infected-recovered (SIR) | Track transmission and recovering rates in time, data fitting, management strategies | [ |
| Susceptible, un-quanrantined infected, quarantined infected, confirmed infected (SUQC) | Effectiveness of control measures and quarantine | [ |
| Susceptible-infectious-quarantined-recovered (SIQR) | Quarantine, management strategies | [ |
| Stereographic Brownian diffusion epidemiology model (SBDiEM) | Modelling of infectious dynamics, nowcasting, and forecasting | [ |
| Susceptible individuals, asymptomatic infected, symptomatic infected, recov- ered, and deceased (SEIRD) | Prediction of lockdown for an optimal time | [ |
| Markov Chain Monte Carlo (MCMC) SPSS modeler | Effects of self-protective measures, effect of temperature levels | [ |
| Susceptible, exposed, infectious, hospitalized, dead (θ-SEIHRD) | Bed required in hospital, presence of transmittable unnoticed cases, various sanitary and infectiousness situations of attmitted people | [ |
| Autoregressive integrated moving average (ARIMA) | Death prediction for one month | [ |
| Fractional nonlinear grey Bernoulli model (FANGBM) | Forecast the number of confirmed cases | [ |
| Logistic | Total number of deaths | [ |
| Linear regression | Daily cumulative confirmed, discharged and death cases | [ |
| q -homotopy analysis trans- form method (q -HATM) | Study of epidemic prophecy | [ |
| SIDARTHE | Spread of the disease | [ |
| Other models | Simulation modelling to help make most informed decisions, minimizing the effect, prediction of deaths | [ |
COVID-19 mathematical modelling—an overview with topology
| Types of models | Models in each category | What does it study? | Advantages of model | Disadvantages of model | References |
|---|---|---|---|---|---|
| State-space models (probabilistic state-space modeling approaches based on deterministic models) (differential equations) (probabalistic equations) | Deterministic compartmental models (SIR) | Track transmission and recovering rates in time, data fitting, management strategies | Simple, easy to use | Other factors relevant to COVID-19 are not included | [ |
| Stochastic models (SEIR) | Dynamics, prediction, management strategies, Effect of temperature and humidity levels | Provides reliable prediction of cases and performs even better when modified to include more states and parameters | Complex and requires assumptions to be made before modelling | [ | |
| Susceptible-infectious-quarantined- recovered (SIQR) | Quarantine, management strategies | [ | |||
| Susceptible-exposed-infectious-quarantined-recovered (SEIQR) | Prediction, management strategies | [ | |||
| Bats-hosts-reservoir-people transmission network (BHRP) | Simulate transmission from the bats to human | Simulates the potential transmission from the infection source (probably be bats) to the human infection | First-hand data on the population mobility and the data on the natural history, the epidemiological characteristics, and the transmission mechanism of the virus is required | [ | |
| Susceptible-exposed-symptomatic-asymptomatic-recovered-seafood market (SEIARW) | Age dependent transmissibility, prediction | Two suspected transmission routes were used to quantify age-specific transmission | Quality first hand epidemiological data are required for greater accuracy | [ | |
| Markov Chain Monte Carlo (MCMC) | Effects of self-protective measures | Estimation of a posteriori probability distribution and confidence intervals for the unknown model parameters as well as for the reproduction number of the infectious virus | Rejection sampling and importance sampling may not work well in high dimensions | [ | |
| SPSS modeler | Investigate the correlation between average daily temperatures and the growth rate of COVID-19 in infected countries | Powerful and versatile | It is hard to implement and latest open-source code packages take time to integrate into the application | [ | |
| ODE metapopulation model | COVID-19 and economics | More realistic; can make quantitative predictions about dynamics especially for different courses of the disease in different age groups | More complicated; a lot of data has to be assumed; starts to move away from the metapopulation concept | [ | |
| Statistical based models | ARIMA (time series auto-regressive models) | Time-series modeling to predict future outbreaks | Straight forward and simple to use | Pre-assumed linear form of the related time-series | [ |
| SARIMA (seasonal time series auto-regressive models) | Real-time assessment of epidemic spread | [ | |||
| Risk index approach | To calculate the risk with which an infected person can enter a region | Simple to calculate and easily interpretable | Considers only one direction to model | [ | |
| Logistic regression models | Mathematical modelling of the growth of infected persons depending on the rate of growth and regional population | Better fitting with existing data | Not accurate for long-term predictions | [ |
Fig. 1COVID-19 Transmission structure model [73]
Fig. 2Spred of infection with intial infection by person A [105]
Fig. 3Important phases of COVID-19 transmission: Exposed or latency period is the phase in which an infected person without symptoms causes transmission. The incubation period is the phase before the symptomatic period. The transmissibility period overlaps both symptomatic and asymptomatic periods [126]
Fig. 4I function variation with t (time) [65]
Fig. 5The proposed models evolving in all compartments [65]
Fig. 6Infection rates predicted for R (reproduction number) = 2.2 and R = 2.3 [71]
Fig. 7A framework to forecast COVID-19 [86]
Fig. 8Algorithm 1 of the time-series prediction model for the confirmed cases (CC) in India [100]
Fig. 9a, b Effect of the probability of transmission (β), d, e quarantine rate (q), and g, h diagnosis rate (δ) of COVID-19 pandemic of Ontario [69]
Fig. 10Model SIR and SIER transfer diagram [63]
Fig. 11Simulated epidemics, cumulative mortality and relative peak hospitalizations [58]
Fig. 12Mutation rate (nucleotide) forecasting [128]
Fig. 13Several deaths from a.r.c. (adjusted reported cases) and from the developed model (EXP) [83]
Fig. 14Forecast of COVID-19 cases for 10 days [95]
Fig. 15Model prediction and data obtained having good fitness. Green dash lines represent forecasting [130]
Fig. 16Model fitness for different countries to active cases [106]
Fig. 17Modelling of COVID-19 dynamics [59]
Fig. 18Daily infections in Yunnan, Hubei, and Bejing [133]
Fig. 19Forecasting of COIVD-19 by data fitting [135]
Fig. 20A pseudo-code for phase 3 prediction Algorithm 3 [78]
Fig. 21Simple reproductive contour plots R0 eight provinces of India concerning the possibility of transmission rate βs disease and quarantined rate βs of sensitive persons [60]