| Literature DB >> 34374181 |
Stefano Cipollari1, Valerio Guarrasi2, Martina Pecoraro1, Marco Bicchetti1, Emanuele Messina1, Lorenzo Farina2, Paola Paci2, Carlo Catalano1, Valeria Panebianco1.
Abstract
BACKGROUND: Prostate magnetic resonance imaging (MRI) is technically demanding, requiring high image quality to reach its full diagnostic potential. An automated method to identify diagnostically inadequate images could help optimize image quality.Entities:
Keywords: artificial intelligence; deep learning; multiparametric MRI; prostate cancer; quality control
Mesh:
Year: 2021 PMID: 34374181 PMCID: PMC9291235 DOI: 10.1002/jmri.27879
Source DB: PubMed Journal: J Magn Reson Imaging ISSN: 1053-1807 Impact factor: 5.119
Summary of the MR Acquisition Parameters
| T2WI | DWI | DCE | |
|---|---|---|---|
| Sequence type | Fast recovery fast spin echo (FRFSE) | Echo planar imaging (EPI) | LAVA gradient echo |
| TE (msec) |
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| TR (msec) |
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| Acquisition plane | Axial and Coronal | Axial | Axial |
| Number of averages | 6 | 2 (b 50); 6 (b 800); 12 (b 1500); 14 (b 2000) | 1 |
| Slice thickness (mm) | 3 | 3 | 4 |
| Matrix size | 320 × 224 | 90 × 90 | 160 × 140 |
| Field of view (cm) | 18 × 18 | 20 × 20 | 18 × 18 |
| b‐values (s/mm2) | N/A | 50–800–1500–2000 | N/A |
| Temporal resolution (s) | N/A | N/A | 6 |
| Contrast media | N/A | N/A | Gadobutrol 0.1 mmol/Kg (injection rate 3.0 mL/sec) |
DCE = Dynamic Contrast‐enhanced; DWI = Diffusion Weighted Imaging; T2WI = T2 Weighted Imaging.
FIGURE 1Graphical representation of the analysis pipeline. Individual slices from a given sequence are preprocessed (including normalization and voxel resampling, and data augmentation) and subsequently fed to the CNN algorithm that assigns a classification label to every slice. Classification results for all slices from the same sequence are then aggregated by means of a majority vote aggregation function, so that a classification label is assigned to the entire acquired sequence.
Summary of the MRI Dataset
| Number of Sequences (slices) | |||
|---|---|---|---|
| Sequence | All Classes | Q0 | Q1 |
| T2WI | 316 (8387) | 35 (923) | 281 (7464) |
| DWI | 316 (8387) | 46 (1235) | 270 (7152) |
| ADC | 316 (8387) | 43 (1133) | 273 (7254) |
| DCE | 291 (119,740) | 37 (15,210) | 254 (104,530) |
| Total | 1239 (144,901) | 161 (18,501) | 1078 (126,400) |
Q0 = low‐quality image; Q1 = high‐quality image.
FIGURE 2Case examples of high‐ and low‐quality scans on T2WI images. It shows examples of high‐ and low‐quality T2 images: (a) high‐quality axial T2WI image (Q1), with good spatial resolution a tissue contrast; (b) low‐quality image (Q0) with poor spatial resolution and blurred details due to patient movement during acquisition, the sequence should be repeated in order to be able to accurately interpret the study; (c) very poor‐quality acquisition (Q0) due to evident magnetic susceptibility artifacts caused by a femoral prosthesis; (d) low‐quality image (Q0) because of inadequate S/N ratio making diagnostic accuracy suboptimal, the sequence needs to be repeated following optimization of the acquisition parameters.
FIGURE 3Case examples of high‐ and low‐quality scans on DWI images. It shows examples of high‐ and low‐quality DWI images: (a) high‐quality DWI image (Q1), with good S/N ratio and no evident artifacts; (b) low‐quality image (Q0) with susceptibility artifacts caused by the presence of air in the rectum—the ability to detect foci in the right posterior peripheral zone is significantly impaired—the sequence could be repeated following attempts to expel the air from the rectum; (c) inadequate acquisition (Q0) with marked distortion and signal void due to magnetic susceptibility artifacts caused by a femoral prosthesis; (d) low‐quality image (Q0) because of inadequate S/N ratio that lower significantly the diagnostic power—the sequence needs to be repeated following optimization of the acquisition parameters.
FIGURE 4Case examples of high‐ and low‐quality scans on DCE images. It shows examples of high‐ and low‐quality perfusion images: (a) high‐quality DCE image, with good contrast enhancement of the prostate gland; (b) low‐quality image (Q0) with low contrast enhancement of the prostate gland and high noise significantly impairing the sensitivity to detect suspicious foci; (c) low‐quality acquisition (Q0) due to both low contrast enhancement of the prostate gland and to low S/N ratio, the diagnostic sensitivity of this sequence is limited; (d) poor‐quality image (Q0) because of marked motion artifacts—the ability to correctly identify areas of pathologic enhancement is compromised.
Train, validation, Test Split
| Number of Sequences | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Train | Validation | Test | |||||||
| Sequence | All | Q0 | Q1 | All | Q0 | Q1 | All | Q0 | Q1 |
| T2WI | 222 | 25 | 197 | 63 | 6 | 57 | 31 | 4 | 27 |
| DWI | 221 | 30 | 191 | 64 | 9 | 55 | 31 | 4 | 27 |
| ADC | 221 | 29 | 193 | 64 | 8 | 55 | 31 | 4 | 27 |
| DCE | 205 | 26 | 179 | 59 | 8 | 51 | 27 | 3 | 24 |
Q0 = low‐quality image; Q1 = high‐quality image.
Mean Accuracy Values and 95% Confidence intervals of the Three Top‐Performing Models Along the 10‐Fold Cross‐Validation for Each Sequence
| Accuracy (mean ± 95% CI) Individual Slice | Accuracy (mean ± 95% CI) Entire Sequence | ||||||
|---|---|---|---|---|---|---|---|
| Sequence | CNN Architecture | Global | Q0 Class | Q1 Class | Global | Q0 Class | Q1 Class |
| T2WI | VGG11 | 89.95 ± 0.02 | 84.16 ± 0.02 | 96.11 ± 0.04 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 |
| ResNet101 | 87.28 ± 0.04 | 80.37 ± 0.03 | 94.34 ± 0.05 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 | |
| ResNet50 | 84.93 ± 0.02 | 76.42 ± 0.04 | 93.53 ± 0.01 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 | |
| DWI | ResNet152 | 79.83 ± 0.04 | 62.13 ± 0.05 | 97.46 ± 0.03 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 |
| VGG19‐BN | 78.82 ± 0.05 | 60.08 ± 0.07 | 97.45 ± 0.03 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 | |
| DenseNet121 | 75.51 ± 0.05 | 55.16 ± 0.07 | 95.78 ± 0.03 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 | |
| ADC | DenseNet161 | 76.64 ± 0.04 | 64.11 ± 0.06 | 89.06 ± 0.03 | 92.31 ± 0.00 | 83.33 ± 0.00 | 100.00 ± 0.00 |
| ResNet50 | 76.09 ± 0.03 | 64.11 ± 0.05 | 87.94 ± 0.02 | 92.31 ± 0.00 | 83.33 ± 0.00 | 100.00 ± 0.00 | |
| VGG13‐BN | 73.14 ± 0.05 | 58.73 ± 0.04 | 87.51 ± 0.07 | 92.31 ± 0.00 | 83.33 ± 0.00 | 100.00 ± 0.00 | |
| DCE | ShuffleNet(v2‐x1‐0) | 96.62 ± 0.01 | 100.00 ± 0.00 | 93.96 ± 0.01 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 |
| ShuffleNet(v2‐x0‐5) | 95.66 ± 0.04 | 99.79 ± 0.07 | 92.15 ± 0.02 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 | |
| MNASNet1‐0 | 93.73 ± 0.03 | 98.90 ± 0.01 | 93.71 ± 0.05 | 100.00 ± 0.00 | 100.00 ± 0.00 | 100.00 ± 0.00 | |
CNN = convolutional neural networks; Q0 = low‐quality image; Q1 = high‐quality image.
Mean Accuracy Values and 95% Confidence Intervals of the Three Worst‐Performing Models Along the 10‐Fold Cross‐Validation for Each Sequence
| Accuracy (mean ± 95% CI) Individual Slice | Accuracy (mean ± 95% CI) Entire Sequence | ||||||
|---|---|---|---|---|---|---|---|
| Sequence | CNN Architecture | Global | Q0 Class | Q1 Class | Global | Q0 Class | Q1 Class |
| T2WI | SqueezeNet1‐1 | 71.07 ± 0.41 | 43.86 ± 0.54 | 88.68 ± 0.47 | 62.50 ± 0.00 | 0.00 ± 0.00 | 100.00 ± 0.00 |
| VGG16‐BN | 72.11 ± 0.74 | 46.48 ± 0.82 | 88.66 ± 0.63 | 87.50 ± 0.29 | 66.67 ± 0.32 | 100.00 ± .00 | |
| SqueezeNet1‐0 | 72.65 ± 0.61 | 57.03 ± 0.44 | 82.75 ± 0.75 | 87.50 ± 0.26 | 66.67 ± 0.28 | 100.00 ± 0.00 | |
| DWI | MobileNet‐V2 | 52.73 ± 0.45 | 55.12 ± 0.37 | 50.74 ± 0.51 | 55.57 ± 0.21 | 25.00 ± 0.17 | 80.00 ± 0.24 |
| MNASNet0‐5 | 59.12 ± 0.63 | 19.18 ± 0.61 | 91.68 ± 0.66 | 55.57 ± 0.18 | 0.00 ± .00 | 100.00 ± 0.00 | |
| AlexNet | 59.95 ± 0.66 | 14.09 ± 0.75 | 97.50 ± 0.62 | 66.67 ± 0.37 | 25.00 ± 0.00 | 100.00 ± 0.00 | |
| ADC | MNASNet0‐5 | 52.46 ± 0.76 | 24.51 ± 0.73 | 85.36 ± 0.74 | 53.86 ± 0.00 | 0.00 ± 0.00 | 100.00 ± 0.00 |
| ResNet28 | 54.25 ± 0.63 | 30.78 ± 0.65 | 81.90 ± 0.63 | 76.92 ± 0.39 | 50.00 ± 0.46 | 100.00 ± 0.00 | |
| AlexNet | 56.67 ± 0.69 | 40.43 ± 0.61 | 75.66 ± 0.76 | 84.63 ± 0.35 | 66.67 ± 0.32 | 100.00 ± 0.00 | |
| DCE | ResNet50 | 71.92 ± 0.74 | 85.81 ± 0.83 | 60.50 ± 0.72 | 89.00 ± 0.00 | 0.00 ± 0.00 | 100.00 ± 0.00 |
| VGG16‐BN | 77.31 ± 0.85 | 79.71 ± 0.77 | 75.32 ± 0.85 | 92.85 ± 0.24 | 33.33 ± 0.25 | 100.00 ± 0.00 | |
| GoogLeNet | 78.55 ± 0.71 | 89.54 ± 0.66 | 69.45 ± .70 | 96.39 ± 0.32 | 66.67 ± 0.33 | 100.00 ± 000 | |