Literature DB >> 34370724

Label-free imaging and classification of live P. falciparum enables high performance parasitemia quantification without fixation or staining.

Paul Lebel1, Rebekah Dial2, Venkata N P Vemuri1, Valentina Garcia2, Joseph DeRisi1,2, Rafael Gómez-Sjöberg1.   

Abstract

Manual microscopic inspection of fixed and stained blood smears has remained the gold standard for Plasmodium parasitemia analysis for over a century. Unfortunately, smear preparation consumes time and reagents, while manual microscopy is skill-dependent and labor-intensive. Here, we demonstrate that deep learning enables both life stage classification and accurate parasitemia quantification of ordinary brightfield microscopy images of live, unstained red blood cells. We tested our method using both a standard light microscope equipped with visible and near-ultraviolet (UV) illumination, and a custom-built microscope employing deep-UV illumination. While using deep-UV light achieved an overall four-category classification of Plasmodium falciparum blood stages of greater than 99% and a recall of 89.8% for ring-stage parasites, imaging with near-UV light on a standard microscope resulted in 96.8% overall accuracy and over 90% recall for ring-stage parasites. Both imaging systems were tested extrinsically by parasitemia titration, revealing superior performance over manually-scored Giemsa-stained smears, and a limit of detection below 0.1%. Our results establish that label-free parasitemia analysis of live cells is possible in a biomedical laboratory setting without the need for complex optical instrumentation. We anticipate future extensions of this work could enable label-free clinical diagnostic measurements, one day eliminating the need for conventional blood smear analysis.

Entities:  

Year:  2021        PMID: 34370724     DOI: 10.1371/journal.pcbi.1009257

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  4 in total

1.  Increasing a microscope's effective field of view via overlapped imaging and machine learning.

Authors:  Xing Yao; Vinayak Pathak; Haoran Xi; Amey Chaware; Colin Cooke; Kanghyun Kim; Shiqi Xu; Yuting Li; Timothy Dunn; Pavan Chandra Konda; Kevin C Zhou; Roarke Horstmeyer
Journal:  Opt Express       Date:  2022-01-17       Impact factor: 3.894

2.  Automated wide-field malaria parasite infection detection using Fourier ptychography on stain-free thin-smears.

Authors:  Osman Akcakır; Lutfi Kadir Celebi; Mohd Kamil; Ahmed S I Aly
Journal:  Biomed Opt Express       Date:  2022-06-15       Impact factor: 3.562

Review 3.  Deep learning for microscopic examination of protozoan parasites.

Authors:  Chi Zhang; Hao Jiang; Hanlin Jiang; Hui Xi; Baodong Chen; Yubing Liu; Mario Juhas; Junyi Li; Yang Zhang
Journal:  Comput Struct Biotechnol J       Date:  2022-02-11       Impact factor: 7.271

4.  Reducing data dimension boosts neural network-based stage-specific malaria detection.

Authors:  Katharina Preißinger; Miklós Kellermayer; Beáta G Vértessy; István Kézsmárki; János Török
Journal:  Sci Rep       Date:  2022-09-30       Impact factor: 4.996

  4 in total

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