Literature DB >> 35209329

Increasing a microscope's effective field of view via overlapped imaging and machine learning.

Xing Yao, Vinayak Pathak, Haoran Xi, Amey Chaware, Colin Cooke, Kanghyun Kim, Shiqi Xu, Yuting Li, Timothy Dunn, Pavan Chandra Konda, Kevin C Zhou, Roarke Horstmeyer.   

Abstract

This work demonstrates a multi-lens microscopic imaging system that overlaps multiple independent fields of view on a single sensor for high-efficiency automated specimen analysis. Automatic detection, classification and counting of various morphological features of interest is now a crucial component of both biomedical research and disease diagnosis. While convolutional neural networks (CNNs) have dramatically improved the accuracy of counting cells and sub-cellular features from acquired digital image data, the overall throughput is still typically hindered by the limited space-bandwidth product (SBP) of conventional microscopes. Here, we show both in simulation and experiment that overlapped imaging and co-designed analysis software can achieve accurate detection of diagnostically-relevant features for several applications, including counting of white blood cells and the malaria parasite, leading to multi-fold increase in detection and processing throughput with minimal reduction in accuracy.

Entities:  

Mesh:

Substances:

Year:  2022        PMID: 35209329      PMCID: PMC8970696          DOI: 10.1364/OE.445001

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  28 in total

1.  Fast and robust multiframe super resolution.

Authors:  Sina Farsiu; M Dirk Robinson; Michael Elad; Peyman Milanfar
Journal:  IEEE Trans Image Process       Date:  2004-10       Impact factor: 10.856

2.  Increased field of view through optical multiplexing.

Authors:  Vicha Treeaporn; Amit Ashok; Mark A Neifeld
Journal:  Opt Express       Date:  2010-10-11       Impact factor: 3.894

3.  A method based on multispectral imaging technique for white blood cell segmentation.

Authors:  Ningning Guo; Libo Zeng; Qiongshui Wu
Journal:  Comput Biol Med       Date:  2005-12-01       Impact factor: 4.589

Review 4.  Computational microscopic imaging for malaria parasite detection: a systematic review.

Authors:  D K Das; R Mukherjee; C Chakraborty
Journal:  J Microsc       Date:  2015-06-05       Impact factor: 1.758

5.  CT Super-Resolution GAN Constrained by the Identical, Residual, and Cycle Learning Ensemble (GAN-CIRCLE).

Authors:  Chenyu You; Wenxiang Cong; Michael W Vannier; Punam K Saha; Eric A Hoffman; Ge Wang; Guang Li; Yi Zhang; Xiaoliu Zhang; Hongming Shan; Mengzhou Li; Shenghong Ju; Zhen Zhao; Zhuiyang Zhang
Journal:  IEEE Trans Med Imaging       Date:  2019-06-14       Impact factor: 10.048

6.  Learned sensing: jointly optimized microscope hardware for accurate image classification.

Authors:  Alex Muthumbi; Amey Chaware; Kanghyun Kim; Kevin C Zhou; Pavan Chandra Konda; Richard Chen; Benjamin Judkewitz; Andreas Erdmann; Barbara Kappes; Roarke Horstmeyer
Journal:  Biomed Opt Express       Date:  2019-11-19       Impact factor: 3.732

7.  White blood cell segmentation by color-space-based k-means clustering.

Authors:  Congcong Zhang; Xiaoyan Xiao; Xiaomei Li; Ying-Jie Chen; Wu Zhen; Jun Chang; Chengyun Zheng; Zhi Liu
Journal:  Sensors (Basel)       Date:  2014-09-01       Impact factor: 3.576

8.  Malaria parasite detection and cell counting for human and mouse using thin blood smear microscopy.

Authors:  Mahdieh Poostchi; Ilker Ersoy; Katie McMenamin; Emile Gordon; Nila Palaniappan; Susan Pierce; Richard J Maude; Abhisheka Bansal; Prakash Srinivasan; Louis Miller; Kannappan Palaniappan; George Thoma; Stefan Jaeger
Journal:  J Med Imaging (Bellingham)       Date:  2018-12-12

9.  Deep learning predicts microbial interactions from self-organized spatiotemporal patterns.

Authors:  Joon-Yong Lee; Natalie C Sadler; Robert G Egbert; Christopher R Anderton; Kirsten S Hofmockel; Janet K Jansson; Hyun-Seob Song
Journal:  Comput Struct Biotechnol J       Date:  2020-05-29       Impact factor: 7.271

10.  Random access parallel microscopy.

Authors:  Mishal Ashraf; Sharika Mohanan; Byu Ri Sim; Anthony Tam; Kiamehr Rahemipour; Denis Brousseau; Simon Thibault; Alexander D Corbett; Gil Bub
Journal:  Elife       Date:  2021-01-12       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.