Literature DB >> 3435744

Predicting antibody hypervariable loop conformation. I. Ensembles of random conformations for ringlike structures.

P S Shenkin, D L Yarmush, R M Fine, H J Wang, C Levinthal.   

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Year:  1987        PMID： 3435744     DOI： 10.1002/bip.360261207

Source DB:  PubMed          Journal:  Biopolymers        ISSN： 0006-3525            Impact factor:   2.505


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  51 in total

1.  Modeling of loops in protein structures.

Authors:  A Fiser; R K Do; A Sali
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

2.  Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction.

Authors:  Zhexin Xiang; Cinque S Soto; Barry Honig
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

3.  Cyclic coordinate descent: A robotics algorithm for protein loop closure.

Authors:  Adrian A Canutescu; Roland L Dunbrack
Journal:  Protein Sci       Date:  2003-05       Impact factor: 6.725

4.  Probing the structure of falcipain-3, a cysteine protease from Plasmodium falciparum: comparative protein modeling and docking studies.

Authors:  Yogesh A Sabnis; Prashant V Desai; Philip J Rosenthal; Mitchell A Avery
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

5.  Protein loop closure using orientational restraints from NMR data.

Authors:  Chittaranjan Tripathy; Jianyang Zeng; Pei Zhou; Bruce Randall Donald
Journal:  Proteins       Date:  2011-12-13

6.  The effect of end constraints on protein loop kinematics.

Authors:  Steven Hayward; Akio Kitao
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

7.  Evolutionary conservation and predicted structure of the Drosophila extra sex combs repressor protein.

Authors:  J Ng; R Li; K Morgan; J Simon
Journal:  Mol Cell Biol       Date:  1997-11       Impact factor: 4.272

8.  Ab initio construction of all-atom loop conformations.

Authors:  Haiyan Jiang; Christian Blouin
Journal:  J Mol Model       Date:  2005-10-25       Impact factor: 1.810

9.  Optimization of the GB/SA solvation model for predicting the structure of surface loops in proteins.

Authors:  Agnieszka Szarecka; Hagai Meirovitch
Journal:  J Phys Chem B       Date:  2006-02-16       Impact factor: 2.991

10.  Prediction of protein loop structures using a local move Monte Carlo approach and a grid-based force field.

Authors:  Meng Cui; Mihaly Mezei; Roman Osman
Journal:  Protein Eng Des Sel       Date:  2008-10-27       Impact factor: 1.650
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