Literature DB >> 34350428

Graph Matching Based Connectomic Biomarker with Learning for Brain Disorders.

Rui Sherry Shen1, Jacob A Alappatt1, Drew Parker1, Junghoon Kim2, Ragini Verma1, Yusuf Osmanlıoğlu1.   

Abstract

Advances in neuroimaging techniques such as diffusion MRI and functional MRI enabled evaluation of the brain as an information processing network that is called connectome. Connectomic analysis has led to numerous findings on the organization of the brain its pathological changes with diseases, providing imaging-based biomarkers that help in diagnosis and prognosis. A large majority of connectomic biomarkers benefit either from graph-theoretical measures that evaluate brain's network structure, or use standard metrics such as Euclidean distance or Pearson's correlation to show between-connectomes relations. However, such methods are limited in diagnostic evaluation of diseases, because they do not simultaneously measure the difference between individual connectomes, incorporate disease-specific patterns, and utilize network structure information. To address these limitations, we propose a graph matching based method to quantify connectomic similarity, which can be trained for diseases at functional systems level to provide a subject-specific biomarker assessing the disease. We validate our measure on a dataset of patients with traumatic brain injury and demonstrate that our measure achieves better separation between patients and controls compared to commonly used connectomic similarity measures. We further evaluate the vulnerability of the functional systems to the disease by utilizing the parameter tuning aspect of our method. We finally show that our similarity score correlates with clinical scores, highlighting its potential as a subject-specific biomarker for the disease.

Entities:  

Keywords:  Connectome; Graph edit distance; Graph matching; Imaging biomarker; Learning edit costs; MCMC

Year:  2020        PMID: 34350428      PMCID: PMC8329857          DOI: 10.1007/978-3-030-60365-6_13

Source DB:  PubMed          Journal:  Uncertain Safe Util Mach Learn Med Imaging Graph Biomed Image Anal (2020)


  16 in total

Review 1.  Disease and the brain's dark energy.

Authors:  Dongyang Zhang; Marcus E Raichle
Journal:  Nat Rev Neurol       Date:  2010-01       Impact factor: 42.937

2.  Structural brain connectivity and cognitive ability differences: A multivariate distance matrix regression analysis.

Authors:  Vicente Ponsoda; Kenia Martínez; José A Pineda-Pardo; Francisco J Abad; Julio Olea; Francisco J Román; Aron K Barbey; Roberto Colom
Journal:  Hum Brain Mapp       Date:  2016-10-11       Impact factor: 5.038

Review 3.  Structural connectomics in brain diseases.

Authors:  Alessandra Griffa; Philipp S Baumann; Jean-Philippe Thiran; Patric Hagmann
Journal:  Neuroimage       Date:  2013-04-25       Impact factor: 6.556

4.  Default mode network connectivity predicts sustained attention deficits after traumatic brain injury.

Authors:  Valerie Bonnelle; Robert Leech; Kirsi M Kinnunen; Tim E Ham; Cristian F Beckmann; Xavier De Boissezon; Richard J Greenwood; David J Sharp
Journal:  J Neurosci       Date:  2011-09-21       Impact factor: 6.167

5.  Connectomic consistency: a systematic stability analysis of structural and functional connectivity.

Authors:  Yusuf Osmanlıoğlu; Jacob A Alappatt; Drew Parker; Ragini Verma
Journal:  J Neural Eng       Date:  2020-07-13       Impact factor: 5.379

6.  The organization of the human cerebral cortex estimated by intrinsic functional connectivity.

Authors:  B T Thomas Yeo; Fenna M Krienen; Jorge Sepulcre; Mert R Sabuncu; Danial Lashkari; Marisa Hollinshead; Joshua L Roffman; Jordan W Smoller; Lilla Zöllei; Jonathan R Polimeni; Bruce Fischl; Hesheng Liu; Randy L Buckner
Journal:  J Neurophysiol       Date:  2011-06-08       Impact factor: 2.714

7.  Brain connectivity and postural control in young traumatic brain injury patients: A diffusion MRI based network analysis.

Authors:  K Caeyenberghs; A Leemans; C De Decker; M Heitger; D Drijkoningen; C Vander Linden; S Sunaert; S P Swinnen
Journal:  Neuroimage Clin       Date:  2012-10-02       Impact factor: 4.881

8.  Loss of microstructural integrity in the limbic-subcortical networks for acute symptomatic traumatic brain injury.

Authors:  Yanan Zhu; Zhengjun Li; Lijun Bai; Yin Tao; Chuanzhu Sun; Min Li; Longmei Zheng; Bao Zhu; Jun Yao; Heping Zhou; Ming Zhang
Journal:  Biomed Res Int       Date:  2014-02-20       Impact factor: 3.411

9.  Disrupted Intrinsic Connectivity among Default, Dorsal Attention, and Frontoparietal Control Networks in Individuals with Chronic Traumatic Brain Injury.

Authors:  Kihwan Han; Sandra B Chapman; Daniel C Krawczyk
Journal:  J Int Neuropsychol Soc       Date:  2016-02       Impact factor: 2.892

10.  Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity.

Authors:  Emily S Finn; Xilin Shen; Dustin Scheinost; Monica D Rosenberg; Jessica Huang; Marvin M Chun; Xenophon Papademetris; R Todd Constable
Journal:  Nat Neurosci       Date:  2015-10-12       Impact factor: 24.884

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  1 in total

1.  Connectomic assessment of injury burden and longitudinal structural network alterations in moderate-to-severe traumatic brain injury.

Authors:  Yusuf Osmanlıoğlu; Drew Parker; Jacob A Alappatt; James J Gugger; Ramon R Diaz-Arrastia; John Whyte; Junghoon J Kim; Ragini Verma
Journal:  Hum Brain Mapp       Date:  2022-04-29       Impact factor: 5.399

  1 in total

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