Literature DB >> 34350414

Natural Language Processing of Radiology Text Reports: Interactive Text Classification.

Walter F Wiggins1, Felipe Kitamura1, Igor Santos1, Luciano M Prevedello1.   

Abstract

This report presents a hands-on introduction to natural language processing (NLP) of radiology reports with deep neural networks in Google Colaboratory (Colab) to introduce readers to the rapidly evolving field of NLP. The implementation of the Google Colab notebook was designed with code hidden to facilitate learning for noncoders (ie, individuals with little or no computer programming experience). The data used for this module are the corpus of radiology reports from the Indiana University chest x-ray collection available from the National Library of Medicine's Open-I service. The module guides learners through the process of exploring the data, splitting the data for model training and testing, preparing the data for NLP analysis, and training a deep NLP model to classify the reports as normal or abnormal. Concepts in NLP, such as tokenization, numericalization, language modeling, and word embeddings, are demonstrated in the module. The module is implemented in a guided fashion with the authors presenting the material and explaining concepts. Interactive features and extensive text commentary are provided directly in the notebook to facilitate self-guided learning and experimentation with the module. Keywords: Neural Networks, Negative Expression Recognition, Natural Language Processing, Computer Applications, Informatics © RSNA, 2021. 2021 by the Radiological Society of North America, Inc.

Keywords:  Computer Applications; Informatics; Natural Language Processing; Negative Expression Recognition; Neural Networks

Year:  2021        PMID: 34350414      PMCID: PMC8328116          DOI: 10.1148/ryai.2021210035

Source DB:  PubMed          Journal:  Radiol Artif Intell        ISSN: 2638-6100


  18 in total

Review 1.  Natural Language Processing Technologies in Radiology Research and Clinical Applications.

Authors:  Tianrun Cai; Andreas A Giannopoulos; Sheng Yu; Tatiana Kelil; Beth Ripley; Kanako K Kumamaru; Frank J Rybicki; Dimitrios Mitsouras
Journal:  Radiographics       Date:  2016 Jan-Feb       Impact factor: 5.333

2.  Magician's Corner: How to Start Learning about Deep Learning.

Authors:  Bradley J Erickson
Journal:  Radiol Artif Intell       Date:  2019-07-31

3.  Magician's Corner: 4. Image Segmentation with U-Net.

Authors:  Bradley J Erickson; Jason Cai
Journal:  Radiol Artif Intell       Date:  2020-01-29

4.  Magician's Corner: 5. Generative Adversarial Networks.

Authors:  Bradley J Erickson; Jason Cai
Journal:  Radiol Artif Intell       Date:  2020-03-25

5.  Preparing Radiologists to Lead in the Era of Artificial Intelligence: Designing and Implementing a Focused Data Science Pathway for Senior Radiology Residents.

Authors:  Walter F Wiggins; M Travis Caton; Kirti Magudia; Sha-Har A Glomski; Elizabeth George; Michael H Rosenthal; Glenn C Gaviola; Katherine P Andriole
Journal:  Radiol Artif Intell       Date:  2020-11-04

6.  Magician's Corner: 7. Using Convolutional Neural Networks to Reduce Noise in Medical Images.

Authors:  Nathan Robert Huber; Andrew D Missert; Bradley J Erickson
Journal:  Radiol Artif Intell       Date:  2020-09-30

7.  Artificial Intelligence and the Trainee Experience in Radiology.

Authors:  Scott A Simpson; Tessa S Cook
Journal:  J Am Coll Radiol       Date:  2020-10-01       Impact factor: 5.532

8.  Artificial Intelligence and Machine Learning in Radiology Education Is Ready for Prime Time.

Authors:  Priscilla J Slanetz; Dania Daye; Po-Hao Chen; Lonie R Salkowski
Journal:  J Am Coll Radiol       Date:  2020-05-16       Impact factor: 5.532

9.  Preparing a collection of radiology examinations for distribution and retrieval.

Authors:  Dina Demner-Fushman; Marc D Kohli; Marc B Rosenman; Sonya E Shooshan; Laritza Rodriguez; Sameer Antani; George R Thoma; Clement J McDonald
Journal:  J Am Med Inform Assoc       Date:  2015-07-01       Impact factor: 4.497

10.  Artificial Intelligence in Imaging: The Radiologist's Role.

Authors:  Daniel L Rubin
Journal:  J Am Coll Radiol       Date:  2019-09       Impact factor: 5.532

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  3 in total

1.  Extracting Radiological Findings With Normalized Anatomical Information Using a Span-Based BERT Relation Extraction Model.

Authors:  Kevin Lybarger; Aashka Damani; Martin Gunn; O Zlem Uzuner; Meliha Yetisgen
Journal:  AMIA Annu Symp Proc       Date:  2022-05-23

2.  On the Opportunities and Risks of Foundation Models for Natural Language Processing in Radiology.

Authors:  Walter F Wiggins; Ali S Tejani
Journal:  Radiol Artif Intell       Date:  2022-07-20

3.  Performance of Multiple Pretrained BERT Models to Automate and Accelerate Data Annotation for Large Datasets.

Authors:  Ali S Tejani; Yee S Ng; Yin Xi; Julia R Fielding; Travis G Browning; Jesse C Rayan
Journal:  Radiol Artif Intell       Date:  2022-06-29
  3 in total

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