| Literature DB >> 34343644 |
Ali Najmeddin1, Mina Bahrololoumi Shapourabadi2, Mahdi Behdani3, Farid Dorkoosh4.
Abstract
Background Since December 2019, the newly emerged SARS-CoV-2 virus continues to infect humans and many people died from severe Covid-19 during the last 2 years worldwide. Different approaches are being used for treatment of this infection and its consequences, but limited results have been achieved and new therapeutics are still needed. One of the most interesting biotherapeutics in this era are Nanobodies which have shown very promising results in recent researches. Scope of review Here, we have reviewed the potentials of Nanobodies in Covid-19 treatment. We have also discussed the properties of these biotherapeutics that make them very suitable for pulmonary drug delivery, which seems to be very important route of administration in this disease. Major conclusion Nanobodies with their special biological and biophysical characteristics and their resistance against harsh manufacturing condition, can be considered as promising, targeted biotherapeutics which can be administered by pulmonary delivery pharmaceutical systems against Covid-19. General significance Covid-19 has become a global problem during the last two years and with emerging mutant strains, prophylactic and therapeutic approaches are still highly needed. Nanobodies with their specific properties can be considered as valuable and promising candidates in Covid-19 therapy.Entities:
Keywords: Covid-19; Nanobody; Pulmonary drug delivery; SARS-CoV-2
Year: 2021 PMID: 34343644 PMCID: PMC8325376 DOI: 10.1016/j.bbagen.2021.129974
Source DB: PubMed Journal: Biochim Biophys Acta Gen Subj ISSN: 0304-4165 Impact factor: 3.770
Fig. 1Summary of strategies for Covid-19 treatment.
Fig. 2SARS-CoV-2 neutralization by Nanobodies prevents viral entrance to the target cell. Spike RBD-ACE2 interaction is considered as a therapeutic target for binding and prevention of infection.
Fig. 4Schematic process and steps of Nanobody production against SARS-CoV-2 and pharmaceutical formulation in pulmonary dosage form. A. First a Nanobody library should be prepared for example by immunizing the camel or camelid by SARS-CoV-2 spike protein. B. After the defined duration, blood will be collected and lymphocytes are separated. C. The camel blood contains VHH antibody, the smallest functional part of the VHH antibody is called Nanobody. D. The library is screened for Nanobodies against spike SARS-CoV-2 protein (specially the RBD). E. Washing non-specific phages and elution and amplification of the specific-Nanobodies. F. Virus neutralization assay is performed to select the Nanobodies with the most affinity to the SARS-CoV-2 Spike. G. Expression (in E. coli or yeast or any other suitable expression systems) and Large-scale production of the selected Nanobody with the highest affinity for the SARS-CoV-2 virus. H. After purification and downstream processes, produced Nanobodies will be formulated in a suitable dosage form for pulmonary delivery.
Nanobodies developed against SARS-CoV-2 during the Covid-19 pandemic.
| Nanobody format (name) | Source | Expression System | SARS-Cov-2 target protein | Neutralization or binding ability | Claims | References | |
|---|---|---|---|---|---|---|---|
| 1 | Monovalent (Nb11-59) | Immunized Camel with RBD | RBD | Nb11-59 Kd = 21.6 nM Block the interaction between ACE2 and eight different SARS-CoV-2-RBD variants. Potent neutralizing ability against authentic SARS-CoV-2 in the Plaque Reduction Neutralization Test (PRNT) at the concentration of 50 and 5 μg/ml | Good stability profile which was not impacted by nebulization. | [ | |
| 2 | Sybody | Synthetic | RBD | Six Sybodies can bind to the viral spike protein with double-digit nanomolar affinity Five Sybodies showed substantial inhibition of RBD interaction with ACE2 | Binding small antiviral molecules to the Sybody can increase their antiviral potency due to recognizing secondary epitopes of the virus. | [ | |
| 3 | Monovalent Fc conjugated (Nanosota-1C-Fc) | Naïve library from llamas and alpacas | RBD | Tightly bound to the SARS-CoV-2 RBD and completely blocked out ACE2 (Kd = 15.7 pM) Potently neutralized SARS-CoV-2 pseudovirus entry and authentic infection. Preventive and therapeutic efficacy of this Nb in hamsters subjected to SARS-CoV-2 infection. | Affinity maturation with error-prone PCR was done More than 10-day in vivo half-life efficacy (Fc conjugation) and high tissue bioavailability | [ | |
| 4 | Monovalent (Nb21 or Pin-21) | Immunized llama with RBD | RBD | Nb-21 reached 100% neutralization and neutralized the virus in a dose-dependent manner (IC50 values of 0.022 nM) Subpicomolar affinity in Nb21 (KD < 1 pM) | Thermostable to 72.8 °C Soluble after ~6 weeks of storage at room temperature Resistant to lyophilization and aerosolization Intranasal delivery of PiN-21 at 0.6 mg/kg protected infected animals from weight loss and substantially reduced viral burdens in both lower and upper airways compared to control. | [ | |
| 5 | Monovalent (Nb6, 11, 3, mNb6) bivalent (Nb6-bi) Trivalent (Nb6-tri, mNb6-tri) | Yeast surface-displayed library of synthetic nanobody sequences | RBD | Panel of nanobodies that\bind to multiple epitopes on Spike and block ACE2 interaction via two distinct mechanisms. Femtomolar affinity for SARS-CoV-2 Spike and picomolar neutralization of SARS-CoV-2 infection in mNb6-tri | These constructs showed preserved stability and function after aerosolization, lyophilization, and heat treatment. Aerosol-mediated delivery by neutralizer directly to the airway epithelia. | [ | |
| 6 | Monovalent (Fu2) Monovalent Fc conjugated (Fu2-Fc) Dimers | Immunized | Fu2: | RBD | A PRNT using the B.1.351 (501Y·V2)1 variant showed that Fu2 very potently neutralized this novel variant and that the Fu2 dimer and Fu2-Fc improved neutralization efficiency Prophylactic and therapeutic efficacy assessments in transgenic mice that express human ACE2 as a model were performed and the data showed that the Fu2-Ty1 dimer suppressed SARS-CoV-2 in vivo. | [ | |
| 7 | Monovalent (Nb 12, 15,17,19, 30, 56) Bivalent Trivalent | Immunized | Unknown | RBD | Dissociation constants more than 30 nM The Nb monomers displayed nM and sub-nM half-maximal inhibitory concentration (IC50) in in vitro lentiviral particles pseudotyped with the SARS-CoV-2 spike | Some Nbs are ineffective against viruses that carry substitutions in the RBD, but combining the two Nb classes into heterotrimeric constructs might further improve their efficacy against wild and mutant type of virus. Nbs were thermostable and can be aerosolized with commercially available mesh nebulizers without losing neutralization activity. | [ |
| 8 | Monovalent (VHH E, U, V, W) Bivalent (EE, EV, VE) Trivalent (EEE) | Immunized Alpaca and Llama with RBD and formalin-inactivated SARS-CoV-2 | RBD | Dissociation constants between 2 and 22 nM In monomer form IC50 values ranged from 48 to 185 nM as measured by PRNTs. In dimer form IC50 values of 0.7 nM for EV, 1.32 nM for VE, 180 for EE and 170 pM for EEE were achieved. | Targeting two independent epitopes on the RBD can prevent viral escape. Bivalent or trivalent of these nanobodies fusions increased the neutralizing potential in vitro. | [ | |
| 9 | Monovalent (W25) | Immunized Alpaca with spike protein | RBD | Sub-nanomolar affinity (KD = 295 ± 84 pM) Strong neutralizing activity with IC50 values of 9.82 ± 1.92 nM for D614 and 5.09 ± 1.09 nM for G614 SARS-CoV-2 variant | W25 is a single and monomeric Nanobody that binds to the SARS-CoV-2 RBD variant with sub-nanomolar affinity and efficiently competes with ACE2 receptor binding. | [ | |
| 10 | Monovalent (aRBD2, 3, 5, 47, 41, 42) Bivalent (aRBD2-5, aRBD2-7) Homo bivalent Fc conjugated (Nb-TEV-Fc) | Immunized Alpaca with RBD | Mammalian expression system | RBD | Dissociation constants between 2.60 and 21.9 nM in monovalent form, 1.59–72.7 nM in fusion with Fc and 59.2 pM and 0.25 nM in dimeric form (aRBD2-5 and aRBD2-7) Nb-Fc fusions and dimeric forms showed enhanced neutralizing potency compared to monovalent form | Therapeutic and diagnostic potential | [ |
| 11 | Monovalent (H11-D4, H11-H4) Homo bivalent Fc conjugated (H11-D4-Fc, H11-H4-Fc) | Naïve llama library | RBD | Dissociation constants between 5 and 10 nM in monovalent form Potent neutralization capacity in PRNT (ND50 of 6 nM for H11-H4-Fc and 18 nM for H11-D4-Fc) | Passive immunization of severely ill C-ovid-19 patients with a cocktail of laboratory-synthesized neutralizing Nb | [ | |
| 12 | Monovalent Fc conjugated Trivalent (3F-1B-2A, 1B-3F-2A) | Naïve llama library and humanized synthetic library | Mammalian | RBD | Kd ~ 0.047 nM for tri-specific VHH-Fcs 3F-1B-2A and Kd ~ 0.095 nM for 1B-3F-2A tri-specific VHH-Fcs were more effective in neutralizing the pseudovirus infection than the combination treatment, with IC50 values of 3.00 nM for 3F-1B-2A, 6.44 nM for 1B-3F-2A | tri-specific VHH-Fc showed more potent RBD binding, RBD/ACE2 blocking, and SARS-CoV-2 pseudovirus neutralization than the bi-specific VHH-Fc or combination of individual monoclonal VHH-Fc | [ |
| 13 | Monovalent Fc conjugated (Nb15-Fc, Nb22-Fc, Nb31-Fc) bi-, tri-, tetra- valent tri- valent with albumin specific Nb (Nb15-NbH-Nb15) | Immunized Alpaca with spike protein | Mammalian cells | RBD | Kd from 1.13 to 1.76 nM for monovalent form Potent neutralization activity with IC50 values in the range of 10–28.8 pM in pseudovirus neutralization assay. bi-, tri- and tetra-valent form of Nb15 exhibited higher neutralization potency than the monomer | Nb15-NbH-Nb15 provides ultrahigh neutralization potency against SARS-CoV-2 wild 64 type and 18 mutant variants, including the current circulating variants of D614G 65 and N501Y predominantly in the UK and South Africa. 45 Intranasal administration of Nb15-NbH-Nb15 provided 100% protection for both prophylactic and 46 therapeutic purposes against SARS-CoV-2 infection in transgenic hACE2 mice. | [ |
| 14 | Sybody (Sb23) bivalent Fc conjugated (Sb23-Fc) | Synthetic sybody libraries | RBD | Sb23 displayed high affinity with Kd = 75 nM Pseudovirus neutralizing potency with an IC50 of 0.6 μg/ml in monomeric form. The bivalent Sb23-Fc constructs, displays ~100-fold improved neutralization potential, compared to its monovalent counterpart, with an IC50 of 0.007 μg/ml | Synthetic libraries are an alternative approach to rapid drug development, quickly generating highly specific binders with neutralization potential. | [ | |
| 15 | Monovalent (NIH-CoVnb-112) | Immunized Llama with spike protein | RBD | NIH NIH-CoVnb-112 blocked interaction between human ACE2 and some RBD variants with similar EC50 (1.11 nM) compared to its blocking effects on the prototype sequence spike protein RBD NIH-CoVnb-112 potently inhibits viral transduction in an infection relevant pseudotyped SARS-CoV-2 virus model. | NIH-CoVnb-112 is resistant to degradation or aggregation during nebulization and is acceptably stable in the presence of plasma. Low-cost, stable, and safe nanobody-based therapeutics will be developed for inhaled use in the home and outside of formal healthcare environments. | [ |
Fig. 3Key specifications of a biomolecule to be formulated in a pulmonary dosage form (which all can be found in Nanobodies).