| Literature DB >> 34343411 |
Akbar Dastjerdi1, S Anna La Rocca1, Siva Karuna1, Christopher Finnegan1, Julie Peake1, Falko Steinbach1.
Abstract
Schmallenberg orthobunyavirus (SBV) was initially detected in 2011 in Germany from dairy cattle with fever and decreased milk yield. The virus infection is now established in many parts of the world with recurrent epidemics. SBV is transmitted through midges and transplacental. No direct virus transmission including via breeding has ever been demonstrated. In some bulls, however, the virus is detectable transiently, in low to minute quantities, in semen post-infection. While the infection is considered of low impact for the dairy industry, some SBV-free countries have adopted a zero-risk approach requiring bull semen batches to be tested for SBV RNA residues prior to import. This, in turn, obligates a protocol to enable sensitive detection of SBV RNA in semen samples for export purposes. Here, we describe how we established a now ISO/IEC 17025 accredited protocol that can effectively detect minute quantities of SBV RNA in semen and also its application to monitor bull semen during two outbreaks in the United Kingdom in 2012 and 2016. The data demonstrate that only a small number of bulls temporarily shed low amounts of SBV.Entities:
Keywords: RT-qPCR; SBV; Schmallenberg virus; bull semen
Mesh:
Substances:
Year: 2021 PMID: 34343411 PMCID: PMC9544961 DOI: 10.1111/tbed.14275
Source DB: PubMed Journal: Transbound Emerg Dis ISSN: 1865-1674 Impact factor: 4.521
Schmallenberg orthobunyavirus (SBV) RNA samples distributed by Friedrich‐Loeffler‐Institut (FLI) Germany as the organiser of a European SBV ring trial and according to cycle (Cq) values. VIROTYPE® SBV RT‐PCR kit (Indical Bioscience) was applied here to test for SBV RNA. SBV Reverse transcription‐quantitative polymerase chain reaction (RT‐qPCR) used by FLI is as described in Bilk et al. (2012)
| RNA source | Sample ID | FLI | APHA |
|---|---|---|---|
| Mean Cq value of technical duplicates | |||
| Semen | BH 661/12 | 33.0 | 34.35 |
| Semen | BH 657/12 | 32.2 | 32.3 |
| Cell culture | SBV‐REF‐RNA 2 × 100 | 35.7 | 36.1 |
| Cell culture | SBV‐REF‐RNA 2 × 101 | 32.8 | 32.7 |
| Cell culture | SBV‐REF‐RNA 2 × 102 | 29.2 | 29.2 |
| Cell culture | SBV‐REF‐RNA 2 × 103 | 25.8 | 25.6 |
| Cell culture | SBV‐REF‐RNA 2 × 104 | 22.5 | 22.5 |
| Cell culture | SBV‐REF‐RNA 2 × 105 | 19.2 | 19.1 |
| Tissue | BH 200/12 | 20.4 | 20.3 |
| Tissue | BH 254/12 | 24.8 | 24.8 |
| Serum | 790 | 24.6 | 25.1 |
| Serum | 668 | 29.6 | 30.1 |
| SBV‐RNA free | RSB50 | No Cq | No Cq |
| RNase‐free water | NTC | No Cq | No Cq |
Semen samples with challenging Cq values (provided by FLI, Germany). The samples were tested applying the entire SBV RNA extraction and SBV RT‐qPCR protocol described here. SBV RT‐qPCR used by FLI is as described in Bilk et al. (2012)
| Sample ID | FLI | APHA | |
|---|---|---|---|
| Biological replicates | Technical replicates averages ( | ||
| BH 651/12−31 | 36.2 | 36.6 | 36.2 |
| BH 657/12−100 | 28.9 | 28.7 | 28.9 |
| BH 684/12−01 | 33.5 | 32.9 | 33.5 |
| BH 657/12−151 | 34.0 | 33.4 | 34.0 |
| BH 159/13−01 | No Cq | No Cq | No Cq |
| BH 159/13−02 | No Cq | No Cq | No Cq |
Summary of Cq values obtained for the SBV RT‐qPCR controls. An SBV‐negative semen sample was used as the negative extraction control (NEC). NEC Cq values obtained for the HEX fluorescence signal (β‐actin) were analysed. It is of note that eight different real‐time PCR machines were used to test samples received under 27 submissions in 2020 and associated controls, overall indicating the robustness of the assay
| Year | No. of submissions | NEC Cq ± STDEV | Neg. SBV control | Pos. SBV control |
|---|---|---|---|---|
| 2017 | 23 | 29.2 ± 1.17 [4] | 27.9 ± 1.39 [5.0] | 28.6 ± 1.5 [5.2] |
| 2018 | 26 | 31.35 ± 2.33 [7.43] | 28.5 ± 1.22 [4.3] | 28.8 ± 0.88 [3.1] |
| 2019 | 22 | 32.9 ± 1.07 [3.3] | 28.9 ± 1.29 [4.5] | 29.08 ± 0.65 [2.2] |
| 2020 | 27 | 31.5 ± 1.6 [5.1] | 29 ± 0.89 [3.1] | 28.9 ± 0.88 [3.0] |
SBV negative and positive controls provided in the VIROTYPE® SBV RT‐PCR kit.
Standard deviation.
Variation coefficient (%).
Bull semen from a UK bull stud was collected during 2012 SBV outbreak and subsequently tested for SBV RNA using the RT‐qPCR protocol described here. The semen of eight bulls was monitored over a prolonged period in 2012 for the appearance of SBV therein. Only two bulls at any given point in time had SBV RNA in their semen and only one (no. 5) over a prolonged period. Days in which the bulls were tested positive for SBV RNA are in bold and underlined
|
|
|
|
|---|---|---|
| 1 | No Cq | 5, 13, 27, 32, 255, 258, 265, 276, 311, 321 |
| 2 | No Cq | 241, 244, 248, 251, 255, 262, 265, 268, 272, 276, 300, 304, 307, 311, 321, 325, 335, 339, 342, 346, 352, 355 |
| 3 | No Cq | 261, 304 |
| 4 | No Cq | 268, 277, 284, 285, 332, 336, 339, 344, 352, 353 |
| 5 | No Cq | 148, 241, 251, 255 |
| 34.6 |
| |
| 35.4 |
| |
| 35.2 |
| |
| 27.6 |
| |
| 32.6 |
| |
| No Cq | 283, 295, 300, 304, 307, 311, 321, 325, 335, 342, 352, 355, | |
| 6 | No Cq | 255, 258, 262, 270, 276, 304, 307, 311, 321, 335, 353 |
| 7 | No Cq | 225, 268, 270, 276, 279, 283, 289, 292, 295, 300, 304, 307, 311, 318, 321, 325, 328, 332, 335, 354 |
| 8 | No Cq | 247, 250, 251, 255, 257, 261, 265 |
| 38.7 |
| |
| No Cq | 277, 284, 290, 292, 293, 297, 306, 312, 318, 320, 326, 329, 332, 339, 342 |
Testing of bulls from a UK bull stud for SBV RNA in 2016. A series of bulls (> 100) was continuously monitored serologically at the time of the 2016 SBV outbreak in England and batches of semen, taken around the period of SBV seroconversion, were tested to detect traces of SBV RNA by the VIROTYPE® SBV RT‐PCR kit. Only five bulls were found to have SBV RNA in their semen, of which two bulls (nos. 3 and 5) shed virus on more than one occasion. Days in which the bulls were tested positive for SBV RNA are in bold and underlined
|
|
|
|
|---|---|---|
| 1. | 246, 249 | No Cq |
|
| 36.8 | |
| 265, 268, 272, 275 | No Cq | |
| 2. |
| 33.60 |
| 278, 285 | No Cq | |
| 3. | 233, 259, 263, 266, 269 | No Cq |
|
| 36.4 | |
|
| 35.8 | |
|
| 38.07 | |
|
| 37.1 | |
| 305, 318 | No Cq | |
| 4. | 256, 259, 263, 266, 269 | No Cq |
|
| 35.8 | |
| 274 | No Cq | |
| 277 | No Cq | |
| 5. | 274, 277, 279 | No Cq |
| 280 | No Cq | |
|
| 38.3 | |
| 288 | No Cq | |
|
| 34.9 |