| Literature DB >> 34337522 |
Loes F M van der Zanden1, Iris A L M van Rooij1, Josine S L T Quaedackers2, Rien J M Nijman2, Martijn Steffens3, Liesbeth L L de Wall4, Ernie M H F Bongers5, Franz Schaefer6, Marietta Kirchner7, Rouven Behnisch7, Aysun K Bayazit8, Salim Caliskan9, Lukasz Obrycki10, Giovanni Montini11,12, Ali Duzova13, Matthias Wuttke14, Rachel Jennings15,16, Neil A Hanley15,16, Natalie J Milmoe17, Paul J D Winyard17, Kirsten Y Renkema18, Michiel F Schreuder19, Nel Roeleveld1, Wout F J Feitz4.
Abstract
BACKGROUND: Posterior urethral valves (PUVs) and ureteropelvic junction obstruction (UPJO) are congenital obstructive uropathies that may impair kidney development.Entities:
Keywords: CDH12; Genome-wide association study; Obstructive uropathy; Posterior urethral valves
Year: 2021 PMID: 34337522 PMCID: PMC8317879 DOI: 10.1016/j.euros.2021.04.001
Source DB: PubMed Journal: Eur Urol Open Sci ISSN: 2666-1683
Characteristics of the patient population used in the discovery analyses
| Patients, | ||
|---|---|---|
| PUV group ( | UPJO group ( | |
| Antenatal detection of urinary tract abnormalities | 68 (22) | 77 (45) |
| Birth weight <2500 g | 19 (6) | 14 (8) |
| Hospital admission within 1 wk after birth for at least 7 d | 60 (19) | 26 (15) |
| Febrile urinary tract infections in the first 4 yr of life | 108 (34) | 34 (20) |
| Kidney abnormalities on ultrasound | 31 (10) | 47 (28) |
| Bladder dysfunction | 130 (41) | 6 (4) |
| Age at pyeloplasty or PUV resection | ||
| <1 yr | 124 (39) | 51 (30) |
| 1–4 yr | 59 (19) | 49 (29) |
| 5–12 yr | 130 (41) | 60 (35) |
| 13–17 yr | 3 (1) | 11 (6) |
| Signs of kidney injury | 93 (29) | 90 (53) |
| Dialysis, nephrectomy or kidney transplantation | 17 (5) | 5 (3) |
| eGFR <60 ml/min/1.73 m2 | 34 (11) | 11 (6) |
| High blood pressure or antihypertensive medication | 31 (10) | 22 (13) |
| Proteinuria | 11 (3) | 6 (4) |
| One kidney functioning < 45% | 55 (17) | 74 (43) |
PUV = posterior urethral valve; UPJO = ureteropelvic junction obstruction; eGFR = estimated glomerular filtration rate.
Urinary tract infections after surgery were not taken into account.
Kidney abnormalities defined as the presence of kidney scars or cysts, kidney dysplasia, increased echogenicity, and/or loss of parenchyma.
Bladder dysfunction defined as training or use of medication to improve bladder function, intermittent catheterization, or vesicostoma/ureterocutaneostoma.
Signs of kidney injury developed during the maximum follow-up period of 10 yr after surgery. Some patients developed more than one of these signs, which is why the numbers do not add up to the total number of patients with signs of kidney injury.
Fig. 1Manhattan plot of genome-wide association study results for 141 PUV and UPJO patients with signs of kidney injury 5 yr after surgery and 216 PUV and UPJO patients without signs of kidney injury after 5 yr. The blue line represents the threshold for suggestive genome-wide significance (p < 1 × 10–5). The six single-nucleotide polymorphisms above this threshold are rs6874819 (p = 7.5 × 10–7), rs9292998 (p = 3.1 × 10–6), and rs12171538 (p = 7.1 × 10–6) on chromosome 5, rs2957086 (p = 9.3 × 10–6) on chromosome 8, and rs9580025 (p = 8.2 × 10–6) and rs2148707 (p = 8.2 × 10–6) on chromosome 13.
Fig. 2Kaplan-Meier plots showing the probability of surviving without kidney injury for PUV patients by rs6874819 genotype in (A) the Dutch discovery sample, (B) the Dutch replication sample, and (C) the European replication sample.
HRs for kidney injury for SNPs passing the 1 × 10−5 threshold separately for PUV and UPJO patients in the Dutch discovery and replication samples, and for SNPs on chromosome 5 in the European replication sample
| Chromosome and SNP | Dutch discovery sample | Dutch replication sample | European replication sample | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PUV patients | UPJO patients | PUV patients | UPJO patients | PUV patients | ||||||
| HR (95% CI) | HR (95% CI) | HR (95% CI) | HR (95% CI) | HR (95% CI) | ||||||
| rs6874819 | ||||||||||
| AA genotype | Reference | Reference | Reference | Reference | Reference | |||||
| GA genotype | 2.8 (1.8–4.3) | 3 × 10−6 | 2.4 (1.5–3.8) | 1 × 10−3 | 1.8 (0.9–3.8) | 0.11 | 1.1 (0.5–2.2) | 0.84 | 1.8 (0.9–3.9) | 0.11 |
| GG genotype | 18 (2.4–131) | 5 × 10−3 | 3.0 (0.7–13) | 0.12 | 2.4 (0.3–18) | 0.40 | – | – | 3.1 (1.1–9.1) | 0.04 |
| rs9292998 | ||||||||||
| AA genotype | Reference | Reference | Reference | Reference | Reference | |||||
| GA genotype | 2.7 (1.7–4.1) | 8 × 10−6 | 2.4 (1.4–4.0) | 1 × 10−3 | 1.6 (0.7–3.5) | 0.22 | 1.1 (0.5–2.2) | 0.84 | 1.7 (0.8–3.8) | 0.17 |
| GG genotype | 17 (2.3–127) | 6 × 10−3 | 3.0 (0.7–12) | 0.13 | 2.3 (0.3–17) | 0.42 | – | – | 3.1 (1.1–9.0) | 0.04 |
| rs12171538 | ||||||||||
| TT genotype | Reference | Reference | Reference | Reference | Reference | |||||
| CT genotype | 2.1 (1.4–3.3) | 1 × 10−3 | 1.4 (0.9–2.3) | 0.13 | 0.9 (0.4–1.9) | 0.80 | 1.6 (1.0–2.8) | 0.08 | 1.0 (0.5–1.9) | 0.89 |
| CC genotype | 5.8 (2.9–12) | 5 × 10−7 | 1.5 (0.5–4.0) | 0.46 | 3.8 (0.9–16) | 0.08 | 0.5 (0.1–3.6) | 0.49 | 3.1 (1.3–7.5) | 0.01 |
| rs2957086 | ||||||||||
| AA genotype | Reference | Reference | Reference | Reference | ||||||
| GA genotype | 1.0 (0.6–1.7) | 1.0 | 1.2 (0.7–2.0) | 0.56 | 1.0 (0.4–2.1) | 0.91 | 1.2 (0.7–2.1) | 0.50 | ||
| GG genotype | 2.3 (1.3–4.1) | 3 × 10−3 | 2.5 (1.4–4.3) | 1 × 10−3 | 0.7 (0.2–1.9) | 0.46 | 0.9 (0.4–1.9) | 0.78 | ||
| rs9580025 | ||||||||||
| CC genotype | Reference | Reference | Reference | Reference | ||||||
| TC genotype | 2.0 (1.3–3.0) | 2 × 10−3 | 1.3 (0.8–2.0) | 0.30 | 1.1 (0.5–2.1) | 0.82 | 0.8 (0.5–1.4) | 0.45 | ||
| TT genotype | 2.7 (1.3–5.5) | 8 × 10−3 | 3.8 (1.8–8.2) | 1 × 10−3 | – | – | 1.1 (0.4–3.0) | 0.90 | ||
| rs2148707 | ||||||||||
| GG | Reference | Reference | Reference | Reference | ||||||
| TG | 2.0 (1.3–3.0) | 2 × 10−3 | 1.3 (0.8–2.0) | 0.30 | 1.1 (0.5–2.1) | 0.82 | 0.9 (0.5–1.4) | 0.59 | ||
| TT | 2.7 (1.3–5.5) | 8 × 10−3 | 3.8 (1.8–8.2) | 1 × 10−3 | – | – | 1.1 (0.4–3.2) | 0.83 | ||
PUV = posterior urethral valve; UPJO = ureteropelvic junction obstruction; SNP = single-nucleotide polymorphism; HR = hazard ratio; CI = confidence interval.
These SNPs were imputed in part for the Dutch replication sample.
HRs for the allelic effect of the rs6874819 single-nucleotide polymorphism on kidney injury among patients with posterior urethral valves in the Dutch discovery, Dutch replication, and European replication samples, and results of the meta-analysis
| Sample | Effect of G vs A allele | |
|---|---|---|
| HR (95% CI) | ||
| Dutch discovery | 2.5 (1.7–3.7) | 1 × 10−6 |
| Dutch replication | 1.7 (0.9–3.3) | 8 × 10−2 |
| European replication | 2.2 (1.3–3.7) | 3 × 10−2 |
| Meta-analysis | 2.3 (1.7–3.0) | 4 × 10−9 |
HR = hazard ratio; CI = confidence interval.
Fig. 3Immunohistochemistry profile for CDH12 in the developing human kidney. (A,B) Sagittal sections through the developing kidney. Brightfield images show CHD12 in brown, counterstained with toluidine blue. The arrow points to CHD12 within developing proximal tubules and the arrowhead indicates the developing glomerulus. Scale bars represent 50 μm. (C–E) Immunostaining results showing clear expression of CDH12 in (C) the retina of a 30-d-old mouse and (D,E) human kidneys 12 wk after conception (wpc). At approximately 12 wk after conception, CDH12 was expressed in the ureteric bud, the precursor of the collecting duct, and in early condensates, where the ureteric bud induces mesenchymal cells to condense and undergo mesenchymal-epithelial conversion, the first stage in nephron epithelial formation. Scale bars represent 100 μm. WPC stands for weeks post conception.