| Literature DB >> 34335599 |
Heena Mehta1, Julianty Angsana2, Robert Bissonnette3, Ernesto J Muñoz-Elías2, Marika Sarfati1.
Abstract
Entities:
Keywords: flow cytometry (FCM); macrophages; monocytes; scRNA-seq; skin - immunology
Year: 2021 PMID: 34335599 PMCID: PMC8317131 DOI: 10.3389/fimmu.2021.691806
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 7.561
Figure 1This figure is another representation of flow cytometry data published in Mehta et al. (Journal of Investigative Dermatology 2021). MNPs gated as CD45+CD11c+HLA-DR+ cells from matched NL and L skin of patients with psoriasis (n = 20) were concatenated for unsupervised analysis. Parameters included in analysis were CD11c, HLA-DR, CD14, CD64, CD163, CD1c, CD1a, CD207, FcεRIα, IL-23p19 and TNFα. Dimensionality reduction was performed by UMAP and clustering by FlowSOM. (A) FlowSOM applied on concatenated CD45+CD11c+HLA-DR+ MNPs identified 19 cell states which were overlaid on combined NL and L UMAP plot. (B) Relative distribution of MNP cell cluster frequencies identified in (A) in NL versus matched L psoriasis skin. (C) UMAP plots showing the increased and decreased areas identified in (B) in L compared to matched NL psoriatic skin. UMAP, Uniform Manifold Approximation and Projection; NL, non-lesional; L, lesional; MNPs, mononuclear phagocytes; SOM, self-organizing map. Note that antigen markers for detection of cDC1 and plasmacytoid DCs were not included in this study.