Literature DB >> 34331280

Multiplexed Tissue Tomography.

Evan H Phillips1, David Scholten2, Amy C Flor2, Stephen J Kron2, Steve Seung-Young Lee3.   

Abstract

Multiplexed tissue tomography enables comprehensive spatial analysis of markers within a whole tissue or thick tissue section. Clearing agents are often used to make tissue transparent and facilitate deep tissue imaging. Many methods of clearing and tissue tomography are currently used in a variety of tissue types. Here we detail a workflow known as transparent tissue tomography (T3), which builds upon previous methods and can be applied to difficult to clear tissues such as tumors.
© 2021. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Antibody; Immunofluorescence; Microscopy; Multiplex imaging; Tissue clearing; Tomography

Year:  2021        PMID: 34331280     DOI: 10.1007/978-1-0716-1593-5_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  21 in total

1.  SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction.

Authors:  Meng-Tsen Ke; Satoshi Fujimoto; Takeshi Imai
Journal:  Nat Neurosci       Date:  2013-06-23       Impact factor: 24.884

2.  Three-dimensional imaging of solvent-cleared organs using 3DISCO.

Authors:  Ali Ertürk; Klaus Becker; Nina Jährling; Christoph P Mauch; Caroline D Hojer; Jackson G Egen; Farida Hellal; Frank Bradke; Morgan Sheng; Hans-Ulrich Dodt
Journal:  Nat Protoc       Date:  2012-10-11       Impact factor: 13.491

3.  Three-Dimensional Optical Mapping of Nanoparticle Distribution in Intact Tissues.

Authors:  Shrey Sindhwani; Abdullah Muhammad Syed; Stefan Wilhelm; Dylan R Glancy; Yih Yang Chen; Michael Dobosz; Warren C W Chan
Journal:  ACS Nano       Date:  2016-04-28       Impact factor: 15.881

4.  Whole-tissue biopsy phenotyping of three-dimensional tumours reveals patterns of cancer heterogeneity.

Authors:  Nobuyuki Tanaka; Shigeaki Kanatani; Raju Tomer; Cecilia Sahlgren; Pauliina Kronqvist; Dagmara Kaczynska; Lauri Louhivuori; Lorand Kis; Claes Lindh; Przemysław Mitura; Andrzej Stepulak; Sara Corvigno; Johan Hartman; Patrick Micke; Artur Mezheyeuski; Carina Strell; Joseph W Carlson; Carlos Fernández Moro; Hanna Dahlstrand; Arne Östman; Kazuhiro Matsumoto; Peter Wiklund; Mototsugu Oya; Ayako Miyakawa; Karl Deisseroth; Per Uhlén
Journal:  Nat Biomed Eng       Date:  2017-10-02       Impact factor: 25.671

Review 5.  A survey of clearing techniques for 3D imaging of tissues with special reference to connective tissue.

Authors:  Adriano Azaripour; Tonny Lagerweij; Christina Scharfbillig; Anna Elisabeth Jadczak; Brita Willershausen; Cornelis J F Van Noorden
Journal:  Prog Histochem Cytochem       Date:  2016-04-14

6.  Genetic control of sex-chromosomal univalency in the spermatocytes of C57BL/6J and DBA/2J mice.

Authors:  F G Biddle; B G MacDonald; B A Eales
Journal:  Can J Genet Cytol       Date:  1985-12

7.  Multiplex three-dimensional optical mapping of tumor immune microenvironment.

Authors:  Steve Seung-Young Lee; Vytautas P Bindokas; Stephen J Kron
Journal:  Sci Rep       Date:  2017-12-05       Impact factor: 4.379

8.  Nondestructive, multiplex three-dimensional mapping of immune infiltrates in core needle biopsy.

Authors:  Steve Seung-Young Lee; Vytautas P Bindokas; Mark W Lingen; Stephen J Kron
Journal:  Lab Invest       Date:  2018-11-06       Impact factor: 5.662

9.  Three-dimensional imaging and quantitative analysis in CLARITY processed breast cancer tissues.

Authors:  Yi Chen; Qi Shen; Sharla L White; Yesim Gokmen-Polar; Sunil Badve; Laurie J Goodman
Journal:  Sci Rep       Date:  2019-04-04       Impact factor: 4.379

10.  Light-sheet microscopy for slide-free non-destructive pathology of large clinical specimens.

Authors:  Adam K Glaser; Nicholas P Reder; Ye Chen; Erin F McCarty; Chengbo Yin; Linpeng Wei; Yu Wang; Lawrence D True; Jonathan T C Liu
Journal:  Nat Biomed Eng       Date:  2017-06-26       Impact factor: 25.671

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