| Literature DB >> 34330815 |
Myrna M T de Rooij1, Renate W Hakze-Van der Honing2, Marcel M Hulst2, Frank Harders2, Marc Engelsma2, Wouter van de Hoef3, Kees Meliefste3, Sigrid Nieuwenweg3, Bas B Oude Munnink4, Isabella van Schothorst3, Reina S Sikkema4, Arco N van der Spek5, Marcel Spierenburg5, Jack Spithoven3, Ruth Bouwstra6, Robert-Jan Molenaar6, Marion Koopmans4, Arjan Stegeman7, Wim H M van der Poel2, Lidwien A M Smit3.
Abstract
OBJECTIVE: Unprecedented SARS-CoV-2 infections in farmed minks raised immediate concerns regarding transmission to humans and initiated intensive environmental investigations to assess occupational and environmental exposure.Entities:
Keywords: COVID-19; air pollution; environment; farmers; viruses
Year: 2021 PMID: 34330815 PMCID: PMC8327637 DOI: 10.1136/oemed-2021-107443
Source DB: PubMed Journal: Occup Environ Med ISSN: 1351-0711 Impact factor: 4.402
Overview of SARS-CoV-2 RNA in particulate matter 10 and inhalable dust samples collected at mink farms at a later phase of the ongoing SARS-CoV-2 outbreak
| 6-hour stationary sampling inside farm | 8-hour personal sampling inside farm | 6-hour stationary sampling outside | ||||||||
| Inhalable dust | Particulate matter 10 | Inhalable dust | Particulate matter 10 | Inhalable dust | Particulate matter 10 | |||||
| Timepoint | Date | Farm | Positives/ | Virus concentration (RNA copies/m3) | Positives/ | Positives/ | Virus concentration (RNA copies/m3) | Positives/ | Positives/ | Positives/ |
| 1 | 28 April 2020 | NB1 | 1/3 | 2.4×103 | 0/3 | Not collected | NA | Not collected | 0/3 | 0/3 |
| 1 | 30 April 2020 | NB2 | 1/3 | 4.9×103 | 0/3 | Not collected | NA | Not collected | 0/3 | 0/3 |
| 1 | 2 May 2020 | NB1B | 1/3 | 3.8×103 | 0/3 | 1/2 | 4.6×103 | Not collected | 0/3 | 0/3 |
| 2 and 3 | 5–16 May 2020 | NB1A, NB2, NB1B | 0/18 | Non-detects | Not applicable | 0/12 | Non-detects | Not applicable | 0/18 | Not applicable |
All 4-day outdoor air samples collected between 28 April 2020 and 21 May 2020 at NB1A, NB1B and NB2 at their premises: SARS-CoV-2 RNA not detected.
NA, not applicable.
Figure 1Overview of viral load in settling dust samples per farm over time collected by means of electrostatic dust fall collectors (EDCs). Percentiles: 25th, 50th and 75th of the virus load detected in EDCs of 2.16E+04, 7.40E+04 and 3.68E+05, respectively. LOD, limit of detection.
Overview of SARS-CoV-2 RNA in particulate matter 10 and inhalable dust samples collected at a mink farm (NB4) during a more acute phase of SARS-CoV-2 outbreak
| Date | Measurement | Inhalable | Particulate matter 10 | Total suspended particles | |||
| Non-detect(s) | Positive sample(s): virus concentration (RNA copies/m3) | Non-detect(s) | Positive sample(s): virus concentration (RNA copies/m3) | Non-detect(s) | Positive sample(s): virus concentration (RNA copies/m3) | ||
| 13 May 2020 | Multiple-day outdoor: spot A only | None | A: 7.1×102 | A | None | Not collected | Not collected |
| 16 May 2020 | Multiple-day outdoor: spot A only | None | A: 3.6×103 | A | None | Not collected | Not collected |
| 19 May 2020 | 6-hour indoor stationary (sampling spots I, II, III, IV, V, VI) | I, II, V | III: 6.6×103 | I, II, III, V | IV: 5.5×103 | Not collected | Not collected |
| 8-hour indoor personal (person X and person Y) | None | X: 4.5×104 | None | X: 2.0×104 | Not collected | Not collected | |
| 21 May 2020 | Multiple-day outdoor: expanded (spot A+ B, C, D) | None | A: 2.6×103 | None | A: 1.1×102 | A, C, D | B: 6.9×102 |
| 25 May 2020 | Multiple-day outdoor: expanded (spot A+ B, C, D) | A, B, C, D | None | A | None | B, D | A: 4.5×102 |
| 28 May 2020 | Multiple-day outdoor: expanded (spot A+ B, C, D) | A, D | None | None | A: 1.2×103 | D | A: 4.8×103 |
I, II, III, IV, V, VI: stationary indoor air sampling spots (see online supplemental figure S1 for a map of the layout of the farm and measurement spots.
A, B, C, D: stationary outdoor air sampling spots (see online supplemental figure S1 for a map of the layout of the farm and measurement spots).
X, personal air sampling of fieldworker X; Y, personal air sampling of fieldworker Y.
Results of multivariable modelling on SARS-CoV-2 RNA in the different sample types of mink housing units
| Variable | Virus load (copies) | Virus presence (non-detect/detect) | ||
| Swipe | Bedding material | Faecal material | Drinker cup swab | |
| Ratio (95% CI) | Ratio (95% CI) | OR (95% CI) | OR (95% CI) | |
| Farm NB1A (indicator) | – | – | – | – |
| Farm NB1B | 0.43* (0.23 to 0.81) | 1.7 (0.25 to 11) | 0.31 (0.081 to 1.11) | 0.28 (0.061 to 1.09) |
| Farm NB2 | 0.37* (0.20 to 0.68) | 0.22 (0.03 to 1.5) | 0.16* (0.042 to 0.56) | 0.15* (0.031 to 0.58) |
| Farm NB4 | 6.80* (2.90 to 16.0) | 45* (3.0 to 670) | 0.19 (0.025 to 1.28) | 1.92 (0.296 to 14.32) |
| Timepoint 1 (indicator) | – | – | – | – |
| Timepoint 2 | 1.10 (0.60 to 2.00) | 1.7 (0.24 to 11) | 0.4 (0.115 to 1.28) | 0.25* (0.058 to 0.97) |
| Timepoint 3 | 0.57 (0.31 to 1.10) | 0.86 (0.12 to 6.0) | 0.11* (0.027 to 0.38) | 0.22* (0.045 to 0.88) |
| Mink recently deceased (vs live mink) | 1.60 (0.95 to 2.60) | 59* (12 to 300) | 0.47 (0.161 to 1.31) | 7.76* (2.156 to 38.32) |
Number of samples (percentage above limit of detection) collected per type: swipe n=99 (100%), bedding material n=94 (83%), faecal material n=95 (54%) and drinker cup swab n=97 (31%).
Censored regression was applied for swipes and bedding material samples. Associations expressed in ratio=estimate of associations to the power of 10 to represent ratio in viral load.
Logistic regression was applied for faecal material samples and swabs of the drinker cups due to the limited number of samples above the limit of detection. Associations expressed in OR.
*P<0.05.