Literature DB >> 34329589

Molecules and fossils tell distinct yet complementary stories of mammal diversification.

Nathan S Upham1, Jacob A Esselstyn2, Walter Jetz3.   

Abstract

Reconstructing the tempo at which biodiversity arose is a fundamental goal of evolutionary biologists, yet the relative merits of evolutionary-rate estimates are debated based on whether they are derived from the fossil record or time-calibrated phylogenies (timetrees) of living species. Extinct lineages unsampled in timetrees are known to "pull" speciation rates downward, but the temporal scale at which this bias matters is unclear. To investigate this problem, we compare mammalian diversification-rate signatures in a credible set of molecular timetrees (n = 5,911 species, ∼70% from DNA) to those in fossil genus durations (n = 5,320). We use fossil extinction rates to correct or "push" the timetree-based (pulled) speciation-rate estimates, finding a surge of speciation during the Paleocene (∼66-56 million years ago, Ma) between the Cretaceous-Paleogene (K-Pg) boundary and the Paleocene-Eocene Thermal Maximum (PETM). However, about two-thirds of the K-Pg-to-PETM originating taxa did not leave modern descendants, indicating that this rate signature is likely undetectable from extant lineages alone. For groups without substantial fossil records, thankfully all is not lost. Pushed and pulled speciation rates converge starting ∼10 Ma and are equal at the present day when recent evolutionary processes can be estimated without bias using species-specific "tip" rates of speciation. Clade-wide moments of tip rates also enable enriched inference, as the skewness of tip rates is shown to approximate a clade's extent of past diversification-rate shifts. Molecular timetrees need fossil-correction to address deep-time questions, but they are sufficient for shallower time questions where extinctions are fewer.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Mammalia; comparative methods; fossil record; lineage diversification; macroevolution; mass extinction; molecular phylogeny; phylogenetics; tip rates; vertebrates

Mesh:

Year:  2021        PMID: 34329589      PMCID: PMC9090300          DOI: 10.1016/j.cub.2021.07.012

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.900


  75 in total

1.  High dispersal ability inhibits speciation in a continental radiation of passerine birds.

Authors:  Santiago Claramunt; Elizabeth P Derryberry; J V Remsen; Robb T Brumfield
Journal:  Proc Biol Sci       Date:  2011-11-16       Impact factor: 5.349

Review 2.  The Evolving Theory of Evolutionary Radiations.

Authors:  M Simões; L Breitkreuz; M Alvarado; S Baca; J C Cooper; L Heins; K Herzog; B S Lieberman
Journal:  Trends Ecol Evol       Date:  2015-11-26       Impact factor: 17.712

3.  Extinction during evolutionary radiations: reconciling the fossil record with molecular phylogenies.

Authors:  Tiago B Quental; Charles R Marshall
Journal:  Evolution       Date:  2009-07-30       Impact factor: 3.694

4.  Extinction rates can be estimated from molecular phylogenies.

Authors:  S Nee; E C Holmes; R M May; P H Harvey
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1994-04-29       Impact factor: 6.237

5.  Speciation dynamics during the global radiation of extant bats.

Authors:  Jeff J Shi; Daniel L Rabosky
Journal:  Evolution       Date:  2015-06-09       Impact factor: 3.694

6.  Taxonomy and Phylogeny Can Yield Comparable Results in Comparative Paleontological Analyses.

Authors:  Laura C Soul; Matt Friedman
Journal:  Syst Biol       Date:  2015-03-24       Impact factor: 15.683

7.  Incomplete Lineage Sorting in Mammalian Phylogenomics.

Authors:  Celine Scornavacca; Nicolas Galtier
Journal:  Syst Biol       Date:  2017-01-01       Impact factor: 15.683

8.  Efficient comparative phylogenetics on large trees.

Authors:  Stilianos Louca; Michael Doebeli
Journal:  Bioinformatics       Date:  2018-03-15       Impact factor: 6.937

9.  The shape of mammalian phylogeny: patterns, processes and scales.

Authors:  Andy Purvis; Susanne A Fritz; Jesús Rodríguez; Paul H Harvey; Richard Grenyer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

10.  Anthracobunids from the middle eocene of India and pakistan are stem perissodactyls.

Authors:  Lisa Noelle Cooper; Erik R Seiffert; Mark Clementz; Sandra I Madar; Sunil Bajpai; S Taseer Hussain; J G M Thewissen
Journal:  PLoS One       Date:  2014-10-08       Impact factor: 3.240

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  1 in total

1.  Evolution of the ancestral mammalian karyotype and syntenic regions.

Authors:  Joana Damas; Marco Corbo; Jaebum Kim; Jason Turner-Maier; Marta Farré; Denis M Larkin; Oliver A Ryder; Cynthia Steiner; Marlys L Houck; Shaune Hall; Lily Shiue; Stephen Thomas; Thomas Swale; Mark Daly; Jonas Korlach; Marcela Uliano-Silva; Camila J Mazzoni; Bruce W Birren; Diane P Genereux; Jeremy Johnson; Kerstin Lindblad-Toh; Elinor K Karlsson; Martin T Nweeia; Rebecca N Johnson; Harris A Lewin
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-26       Impact factor: 12.779

  1 in total

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