Literature DB >> 34327279

PCR-mediated One-day Synthesis of Guide RNA for the CRISPR/Cas9 System.

Naim Hassan1, Farhana Easmin1, Keisuke Ekino1, Satoshi Harashima1.   

Abstract

Nowadays, CRISPR (clustered regularly interspaced short palindromic repeats) and the CRISPR-associated protein (Cas9) system play a major role in genome editing. To target the desired sequence of the genome successfully, guide RNA (gRNA) is indispensable for the CRISPR/Cas9 system. To express gRNA, a plasmid expressing the gRNA sequence is typically constructed; however, construction of plasmids involves much time and labor. In this study, we propose a novel procedure to express gRNA via a much simpler method that we call gRNA-TES (gRNA-transient expression system). This method employs only PCR, and all the steps including PCR and yeast transformation can be completed within 1 day. In comparison with the plasmid-based gRNA delivery system, the performance of gRNA-TES is more effective, and its total time and cost are significantly reduced.
Copyright © 2021 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  CRISPR/Cas9; Genome editing; Guide RNA; PCR-based; Yeast

Year:  2021        PMID: 34327279      PMCID: PMC8292124          DOI: 10.21769/BioProtoc.4082

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  12 in total

1.  A new efficient gene disruption cassette for repeated use in budding yeast.

Authors:  U Güldener; S Heck; T Fielder; J Beinhauer; J H Hegemann
Journal:  Nucleic Acids Res       Date:  1996-07-01       Impact factor: 16.971

2.  gRNA-transient expression system for simplified gRNA delivery in CRISPR/Cas9 genome editing.

Authors:  Farhana Easmin; Naim Hassan; Yu Sasano; Keisuke Ekino; Hisataka Taguchi; Satoshi Harashima
Journal:  J Biosci Bioeng       Date:  2019-04-19       Impact factor: 2.894

3.  Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae.

Authors:  Tadas Jakočiūnas; Ida Bonde; Markus Herrgård; Scott J Harrison; Mette Kristensen; Lasse E Pedersen; Michael K Jensen; Jay D Keasling
Journal:  Metab Eng       Date:  2015-01-28       Impact factor: 9.783

4.  CasEMBLR: Cas9-Facilitated Multiloci Genomic Integration of in Vivo Assembled DNA Parts in Saccharomyces cerevisiae.

Authors:  Tadas Jakočiūnas; Arun S Rajkumar; Jie Zhang; Dushica Arsovska; Angelica Rodriguez; Christian Bille Jendresen; Mette L Skjødt; Alex T Nielsen; Irina Borodina; Michael K Jensen; Jay D Keasling
Journal:  ACS Synth Biol       Date:  2015-03-26       Impact factor: 5.110

5.  Metabolic engineering of Escherichia coli using CRISPR-Cas9 meditated genome editing.

Authors:  Yifan Li; Zhenquan Lin; Can Huang; Yan Zhang; Zhiwen Wang; Ya-Jie Tang; Tao Chen; Xueming Zhao
Journal:  Metab Eng       Date:  2015-06-30       Impact factor: 9.783

6.  High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method.

Authors:  R Daniel Gietz; Robert H Schiestl
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

7.  CRISPR-PCD and CRISPR-PCRep: Two novel technologies for simultaneous multiple segmental chromosomal deletion/replacement in Saccharomyces cerevisiae.

Authors:  Farhana Easmin; Yu Sasano; Shunta Kimura; Naim Hassan; Keisuke Ekino; Hisataka Taguchi; Satoshi Harashima
Journal:  J Biosci Bioeng       Date:  2019-10-01       Impact factor: 2.894

Review 8.  CRISPR/Cas system for yeast genome engineering: advances and applications.

Authors:  Vratislav Stovicek; Carina Holkenbrink; Irina Borodina
Journal:  FEMS Yeast Res       Date:  2017-08-01       Impact factor: 2.796

9.  Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems.

Authors:  James E DiCarlo; Julie E Norville; Prashant Mali; Xavier Rios; John Aach; George M Church
Journal:  Nucleic Acids Res       Date:  2013-03-04       Impact factor: 16.971

10.  RNA-guided editing of bacterial genomes using CRISPR-Cas systems.

Authors:  Wenyan Jiang; David Bikard; David Cox; Feng Zhang; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

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