| Literature DB >> 34327133 |
Alix de Causans1,2,3, Alexandre Carré4,5, Alexandre Roux2,3,6, Arnault Tauziède-Espariat2,3,7, Samy Ammari8,9, Edouard Dezamis2,3,6, Frederic Dhermain4,5, Sylvain Reuzé4,5, Eric Deutsch4,5, Catherine Oppenheim1,2,3, Pascale Varlet2, Johan Pallud2,3,6, Myriam Edjlali1,2,3, Charlotte Robert4,5.
Abstract
OBJECTIVES: To differentiate Glioblastomas (GBM) and Brain Metastases (BM) using a radiomic features-based Machine Learning (ML) classifier trained from post-contrast three-dimensional T1-weighted (post-contrast 3DT1) MR imaging, and compare its performance in medical diagnosis versus human experts, on a testing cohort.Entities:
Keywords: brain metastasis; diagnostic decision support system; glioblastoma; machine learning; radiomics
Year: 2021 PMID: 34327133 PMCID: PMC8315001 DOI: 10.3389/fonc.2021.638262
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1Different steps of the study.
Figure 2Flow chart of patient inclusion.
Demographics and clinical characteristics at diagnosis of the patients included in the training set and in the test set.
| Patients characteristics | Training set | Test set | ||
|---|---|---|---|---|
| BM (n = 72) | GBM (n = 71) | BM (n = 16) | GBM (n = 21) | |
| Mean patient age—years | 59.29 | 58.25 | 59.00 | 58.19 |
| (standard deviation) | (13.29) | (14.59) | (10.9) | (14.5) |
| Proportion of female gender (%) | 53 | 38 | 50 | 52 |
| Proportion of male gender (%) | 47 | 62 | 50 | 48 |
| Largest diameter in mm | 41.40 | 53.39 | 33.85 | 54.93 |
| median [range] | [20.77–77.92] | [24.11–88.12] | [22.41–63.63] | [32.61–102.53] |
| Patients from Center 1 | 56 (77.8%) | 69 (97.2%) | 5 (31.2%) | 18 (85.7%) |
| Patients from Center 2 | 16 (22.2%) | 2 (2.8%) | 5 (31.2%) | 3 (14.3%) |
| Primary lung cancer n (%) | 29 (40.3) | – | 8 (50) | – |
| Primary breast cancer n (%) | 13 (18.0) | – | 3 (18) | – |
| Melanoma n (%) | 9 (12.5) | – | 2 (12.5) | – |
| Primary colo-rectal cancer n (%) | 5 (6.9) | – | 0 (0) | – |
| Primary Clair cell carcinoma n (%) | 4 (5.6) | – | 1 (6.3) | – |
| Other primary cancer * n (%) | 12 (16.7) | – | 2 (12.5) | – |
*Primary rare cancer: choriocarcinoma, sarcoma, salivary gland carcinoma, papillary carcinoma of the thyroid.
Figure 3Coefficient of each radiomic feature in the decision function for the proposed logistic regression model.
Figure 4Areas under the receiver operating characteristics curve of the radiomic classifier after ten-repeated 5-fold cross-validation (A) and on the test set (B).
Figure 5Confusion Matrix of the radiomic model on the test set (A) and distribution of probabilities as predicted by the logistic regression model compared to ground truth (B).
Sensitivities, specificities, balanced accuracies, positive predictive values, negative predictive values of the radiomic classifier and of the neuroradiologists (R1, R2, R3, R4, R5) on the test set.
| Reader | Se* | Sp* | Balanced Accuracy | PPV* | PNV* | Se p-value* | Sp p-value* |
|---|---|---|---|---|---|---|---|
| Radiomic classifier | 0.75 | 0.86 | 0.8 | 0.8 | 0.82 | – | – |
| R1 | 0.88 | 0.86 | 0.87 | 0.82 | 0.9 | 0.41 | 1 |
| R2 | 0.94 | 0.95 | 0.94 | 0.94 | 0.95 | 0.08 | 0.16 |
| R3 | 0.69 | 0.76 | 0.72 | 0.76 | 0.69 | 0.65 | 0.41 |
| R4 | 0.63 | 0.81 | 0.72 | 0.71 | 0.74 | 0.48 | 0.65 |
| R5 | 0.81 | 0.95 | 0.88 | 0.93 | 0.87 | 0.65 | 0.16 |
*Se, Sensitivity; Sp, Specificity; PPV, Positive Predictive Value; PNV, Positive Negative Value; Se p-value, p-value (calculated with McNemar’s test) of the difference between the sensibility of the radiomic classifier and the sensibility of the reader; Sp p-value, p-value (calculated with McNemar’s test) of the difference between the specificity of the radiomic classifier and the specificity of the reader.
Figure 6Examples of 3D representation of a brain metastasis (A) for which the sphericity was equal to 0.76 and a glioblastoma (B) for which the sphericity was equal to 0.45. GBM, Glioblastoma; BM, Brain Metastasis.
Figure 7Four incorrectly classified BM of the test set. Two of them presented tumoral leptomeningitis (arrows, A, B), one a metastatic ventriculitis (C) and the forth one a multilocular lesion (D). Leptomeningitis and ventriculitis may have interfered with spatial delineation of tumor boundaries.