Literature DB >> 34324066

Accurate acid dissociation constant (pKa) calculation for the sulfachloropyridazine and similar molecules.

Fernando Marques Carvalho1, Yuri Alves de Oliveira Só2, Alessandra Sofia Kiametis Wernik2, Mônica de Abreu Silva3, Ricardo Gargano2.   

Abstract

Accurate calculation of the acid dissociation constant (pKa) has fundamental importance for the description of molecular systems with pharmacological activities. The search for a more appropriate procedure for its determination is always welcome and has aroused increasing interest from the scientific community. In this sense, this work presents a computational study involving the combination of ten DFT functionals (M062X, M06L, B3LYP, BLYP, PBEPBE, BP86, LC-BLYP, SPBE, CAM-B3LYP, LC-PBEPBE) and HF method, eight basis set functions (6-311G, 6-311 + G, 6-311G(d,p), 6-311 + G(d,p), 6-311+ +G(d,p), 6-311(2d,2p), 6-311+ +G(2d,2p), and aug-cc-pVDZ), and three solvation models (SMD, PCM, and CPCM) for an accurate sulfachloropyridazine (SCR) pKa determination. It was found that the smallest deviation (0.02 unit of pKa) between the current study and experimental result was achieved with the BLYP/6-311 + G(d,p)/PCM combination. Therefore, this combination was extended to calculate the pKa of six SCR similar molecules selected through the eletroshape similarity method. For all these molecules, the difference between the obtained results and experimental data ranged between 0.14 and 0.69 units of pKa. This feature suggests that the obtained combination can determine pKa with experimental precision for complexes that are formed by sulfonamide functional group (SO2NHR). Graphical Abstract A computational study involving the combination of different levels of theory, basis sets and solvation models for an accurate sulfanamide pKa determination.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Acid dissociation constant (pKa); DFT; Electroshape similarity; Sulfonamide molecules

Year:  2021        PMID: 34324066     DOI: 10.1007/s00894-021-04851-9

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  28 in total

Review 1.  Binding affinity in drug design: experimental and computational techniques.

Authors:  Visvaldas Kairys; Lina Baranauskiene; Migle Kazlauskiene; Daumantas Matulis; Egidijus Kazlauskas
Journal:  Expert Opin Drug Discov       Date:  2019-05-31       Impact factor: 6.098

Review 2.  Experimental and pKa prediction aspects of tautomerism of drug-like molecules.

Authors:  Yvonne Connolly Martin
Journal:  Drug Discov Today Technol       Date:  2018-06-27

Review 3.  Early phase drug discovery: cheminformatics and computational techniques in identifying lead series.

Authors:  Bryan C Duffy; Lei Zhu; Hélène Decornez; Douglas B Kitchen
Journal:  Bioorg Med Chem       Date:  2012-05-05       Impact factor: 3.641

4.  Novel Antibiotic Resistance Determinants from Agricultural Soil Exposed to Antibiotics Widely Used in Human Medicine and Animal Farming.

Authors:  Calvin Ho-Fung Lau; Kalene van Engelen; Stephen Gordon; Justin Renaud; Edward Topp
Journal:  Appl Environ Microbiol       Date:  2017-08-01       Impact factor: 4.792

5.  Accurate pKa Evaluations for Complex Bio-Organic Molecules in Aqueous Media.

Authors:  Bishnu Thapa; Krishnan Raghavachari
Journal:  J Chem Theory Comput       Date:  2019-10-09       Impact factor: 6.006

6.  Electroporation-enhanced transdermal drug delivery: Effects of logP, pKa, solubility and penetration time.

Authors:  Xiao Chen; Lin Zhu; Ruiteng Li; Lulu Pang; Siqing Zhu; Jinqiu Ma; Lina Du; Yiguang Jin
Journal:  Eur J Pharm Sci       Date:  2020-06-04       Impact factor: 4.384

Review 7.  Biochar based removal of antibiotic sulfonamides and tetracyclines in aquatic environments: A critical review.

Authors:  Chathuri Peiris; Sameera R Gunatilake; Todd E Mlsna; Dinesh Mohan; Meththika Vithanage
Journal:  Bioresour Technol       Date:  2017-07-27       Impact factor: 9.642

Review 8.  Drug Metabolism in Preclinical Drug Development: A Survey of the Discovery Process, Toxicology, and Computational Tools.

Authors:  Naiem T Issa; Henri Wathieu; Abiola Ojo; Stephen W Byers; Sivanesan Dakshanamurthy
Journal:  Curr Drug Metab       Date:  2017       Impact factor: 3.731

9.  DrugE-Rank: improving drug-target interaction prediction of new candidate drugs or targets by ensemble learning to rank.

Authors:  Qingjun Yuan; Junning Gao; Dongliang Wu; Shihua Zhang; Hiroshi Mamitsuka; Shanfeng Zhu
Journal:  Bioinformatics       Date:  2016-06-15       Impact factor: 6.937

10.  On the Accuracy of the Direct Method to Calculate pKa from Electronic Structure Calculations.

Authors:  Felipe Ribeiro Dutra; Cleuton de Souza Silva; Rogério Custodio
Journal:  J Phys Chem A       Date:  2020-12-24       Impact factor: 2.781

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.