Literature DB >> 28302026

Drug Metabolism in Preclinical Drug Development: A Survey of the Discovery Process, Toxicology, and Computational Tools.

Naiem T Issa1, Henri Wathieu1, Abiola Ojo2, Stephen W Byers1, Sivanesan Dakshanamurthy1.   

Abstract

BACKGROUND: While establishing efficacy in translational models and humans through clinically-relevant endpoints for disease is of great interest, assessing the potential toxicity of a putative therapeutic drug is critical. Toxicological assessments in the pre-clinical discovery phase help to avoid future failure in the clinical phases of drug development. Many in vitro assays exist to aid in modular toxicological assessment, such as hepatotoxicity and genotoxicity. While these methods have provided tremendous insight into human toxicity by investigational new drugs, they are expensive, require substantial resources, and do not account for pharmacogenomics as well as critical ADME properties. Computational tools can fill this niche in toxicology if in silico models are accurate in relating drug molecular properties to toxicological endpoints as well as reliable in predicting important drug-target interactions that mediate known adverse events or adverse outcome pathways (AOPs).
METHODS: We undertook an unstructured search of multiple bibliographic databases for peer-reviewed literature regarding computational methods in predictive toxicology for in silico drug discovery. As this review paper is meant to serve as a survey of available methods for the interested reader, no focused criteria were applied. Literature chosen was based on the writers' expertise and intent in communicating important aspects of in silico toxicology to the interested reader.
CONCLUSION: This review provides a purview of computational methods of pre-clinical toxicologic assessments for novel small molecule drugs that may be of use for novice and experienced investigators as well as academic and commercial drug discovery entities. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Entities:  

Keywords:  Preclinical drug development; computational tools; drug-target signatures; in silico prediction; toxicology

Mesh:

Substances:

Year:  2017        PMID: 28302026      PMCID: PMC5892202          DOI: 10.2174/1389200218666170316093301

Source DB:  PubMed          Journal:  Curr Drug Metab        ISSN: 1389-2002            Impact factor:   3.731


  111 in total

1.  QSAR and proteo-chemometric analysis of the interaction of a series of organic compounds with melanocortin receptor subtypes.

Authors:  Maris Lapinsh; Peteris Prusis; Ilze Mutule; Felikss Mutulis; Jarl E S Wikberg
Journal:  J Med Chem       Date:  2003-06-19       Impact factor: 7.446

2.  Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

Review 3.  Adverse outcome pathways: a conceptual framework to support ecotoxicology research and risk assessment.

Authors:  Gerald T Ankley; Richard S Bennett; Russell J Erickson; Dale J Hoff; Michael W Hornung; Rodney D Johnson; David R Mount; John W Nichols; Christine L Russom; Patricia K Schmieder; Jose A Serrrano; Joseph E Tietge; Daniel L Villeneuve
Journal:  Environ Toxicol Chem       Date:  2010-03       Impact factor: 3.742

Review 4.  Physiologically based pharmacokinetics joined with in vitro-in vivo extrapolation of ADME: a marriage under the arch of systems pharmacology.

Authors:  A Rostami-Hodjegan
Journal:  Clin Pharmacol Ther       Date:  2012-05-30       Impact factor: 6.875

Review 5.  Illuminating drug discovery with biological pathways.

Authors:  Gordana Apic; Tijana Ignjatovic; Scott Boyer; Robert B Russell
Journal:  FEBS Lett       Date:  2005-03-21       Impact factor: 4.124

Review 6.  In vitro methods in human drug biotransformation research: implications for cancer chemotherapy.

Authors:  N Hariparsad; R S Sane; S C Strom; P B Desai
Journal:  Toxicol In Vitro       Date:  2005-12-15       Impact factor: 3.500

Review 7.  Predicting drug metabolism: experiment and/or computation?

Authors:  Johannes Kirchmair; Andreas H Göller; Dieter Lang; Jens Kunze; Bernard Testa; Ian D Wilson; Robert C Glen; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2015-04-24       Impact factor: 84.694

Review 8.  Development of an adverse outcome pathway for acetylcholinesterase inhibition leading to acute mortality.

Authors:  Christine L Russom; Carlie A LaLone; Daniel L Villeneuve; Gerald T Ankley
Journal:  Environ Toxicol Chem       Date:  2014-08-25       Impact factor: 3.742

Review 9.  Species differences between mouse, rat, dog, monkey and human CYP-mediated drug metabolism, inhibition and induction.

Authors:  Marcella Martignoni; Geny M M Groothuis; Ruben de Kanter
Journal:  Expert Opin Drug Metab Toxicol       Date:  2006-12       Impact factor: 4.481

10.  Optimization and comprehensive characterization of a faithful tissue culture model of the benign and malignant human prostate.

Authors:  Sophia Lisette Maund; Rosalie Nolley; Donna Mae Peehl
Journal:  Lab Invest       Date:  2013-12-02       Impact factor: 5.662

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  14 in total

1.  Proteomics for cancer drug design.

Authors:  Amanda Haymond; Justin B Davis; Virginia Espina
Journal:  Expert Rev Proteomics       Date:  2019-08-04       Impact factor: 3.940

2.  Challenges and Opportunities for Translation of Therapies to Improve Cognition in Down Syndrome.

Authors:  Sarah E Lee; Monica Duran-Martinez; Sabina Khantsis; Diana W Bianchi; Faycal Guedj
Journal:  Trends Mol Med       Date:  2019-11-07       Impact factor: 11.951

3.  Accurate acid dissociation constant (pKa) calculation for the sulfachloropyridazine and similar molecules.

Authors:  Fernando Marques Carvalho; Yuri Alves de Oliveira Só; Alessandra Sofia Kiametis Wernik; Mônica de Abreu Silva; Ricardo Gargano
Journal:  J Mol Model       Date:  2021-07-29       Impact factor: 1.810

4.  The Adverse Outcome Pathway: A Multifaceted Framework Supporting 21st Century Toxicology.

Authors:  Gerald T Ankley; Stephen W Edwards
Journal:  Curr Opin Toxicol       Date:  2018-06-01

Review 5.  Exogenous metabolite feeding on altering antibiotic susceptibility in Gram-negative bacteria through metabolic modulation: a review.

Authors:  Wan Yean Chung; Yan Zhu; Mohd Hafidz Mahamad Maifiah; Naveen Kumar Hawala Shivashekaregowda; Eng Hwa Wong; Nusaibah Abdul Rahim
Journal:  Metabolomics       Date:  2022-07-04       Impact factor: 4.747

6.  Selection of safe artemisinin derivatives using a machine learning-based cardiotoxicity platform and in vitro and in vivo validation.

Authors:  Onat Kadioglu; Sabine M Klauck; Edmond Fleischer; Letian Shan; Thomas Efferth
Journal:  Arch Toxicol       Date:  2021-05-22       Impact factor: 5.153

7.  Prediction of drug metabolites using neural machine translation.

Authors:  Eleni E Litsa; Payel Das; Lydia E Kavraki
Journal:  Chem Sci       Date:  2020-09-24       Impact factor: 9.825

8.  Indole hybridized diazenyl derivatives: synthesis, antimicrobial activity, cytotoxicity evaluation and docking studies.

Authors:  Harmeet Kaur; Jasbir Singh; Balasubramanian Narasimhan
Journal:  BMC Chem       Date:  2019-05-10

Review 9.  Recent Progress in Lab-On-a-Chip Systems for the Monitoring of Metabolites for Mammalian and Microbial Cell Research.

Authors:  Esma Dervisevic; Kellie L Tuck; Nicolas H Voelcker; Victor J Cadarso
Journal:  Sensors (Basel)       Date:  2019-11-18       Impact factor: 3.576

10.  Fungicidal Activity of a Safe 1,3,4-Oxadiazole Derivative Against Candida albicans.

Authors:  Daniella Renata Faria; Raquel Cabral Melo; Glaucia Sayuri Arita; Karina Mayumi Sakita; Franciele Abigail Vilugron Rodrigues-Vendramini; Isis Regina Grenier Capoci; Tania Cristina Alexandrino Becker; Patrícia de Souza Bonfim-Mendonça; Maria Sueli Soares Felipe; Terezinha Inez Estivalet Svidzinski; Erika Seki Kioshima
Journal:  Pathogens       Date:  2021-03-07
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