Literature DB >> 34322842

Fungal diversity in the coastal waters of King George Island (maritime Antarctica).

Gabriela Garmendia1, Angie Alvarez1, Romina Villarreal1, Adalgisa Martínez-Silveira1, Michael Wisniewski2, Silvana Vero3.   

Abstract

Fungi have been reported as common inhabitants of the maritime waters in Antarctica by studies based on culture-dependent methods. More recently, results obtained using DNA sequencing technologies, revealed that fungal diversity worldwide has been underestimated by culture methods. The present study provides the first characterization of fungal communities in the coastal waters of King George Island (maritime Antarctica) using both culture-dependent and high-throughput sequencing (HTS) methods. HTS demostrated a higher level of fungal diversity than the obtained by culture methods. A high prevalence of basidiomycetous yeasts and ascomycetous filamentous fungi was confirmed by both methods, however, Chythriomycota, Rozellomycota, lichenized fungi and Malassezia spp. were detected only by HTS. Correspondingly, members of some genera, such as Metschnikowia, were only found by culture-dependent methods. Our results confirm that culturing and HTS, should be seen as complementary approaches that enable one to obtain a more comprehensive picture of the composition of microbial communities.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Antarctic yeasts; Antarctica; Fungal diversity; High throughput sequencing

Year:  2021        PMID: 34322842     DOI: 10.1007/s11274-021-03112-4

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  42 in total

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Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

Review 3.  Psychrophilic yeasts from worldwide glacial habitats: diversity, adaptation strategies and biotechnological potential.

Authors:  Pietro Buzzini; Eva Branda; Marta Goretti; Benedetta Turchetti
Journal:  FEMS Microbiol Ecol       Date:  2012-03-27       Impact factor: 4.194

4.  The UNITE database for molecular identification of fungi--recent updates and future perspectives.

Authors:  Kessy Abarenkov; R Henrik Nilsson; Karl-Henrik Larsson; Ian J Alexander; Ursula Eberhardt; Susanne Erland; Klaus Høiland; Rasmus Kjøller; Ellen Larsson; Taina Pennanen; Robin Sen; Andy F S Taylor; Leho Tedersoo; Björn M Ursing; Trude Vrålstad; Kare Liimatainen; Ursula Peintner; Urmas Kõljalg
Journal:  New Phytol       Date:  2010-04       Impact factor: 10.151

Review 5.  Environmental contamination in Antarctic ecosystems.

Authors:  R Bargagli
Journal:  Sci Total Environ       Date:  2008-09-02       Impact factor: 7.963

6.  QIIME allows analysis of high-throughput community sequencing data.

Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

Review 7.  From dandruff to deep-sea vents: Malassezia-like fungi are ecologically hyper-diverse.

Authors:  Anthony Amend
Journal:  PLoS Pathog       Date:  2014-08-21       Impact factor: 6.823

8.  Amplicon-Metagenomic Analysis of Fungi from Antarctic Terrestrial Habitats.

Authors:  Marcelo Baeza; Salvador Barahona; Jennifer Alcaíno; Víctor Cifuentes
Journal:  Front Microbiol       Date:  2017-11-14       Impact factor: 5.640

Review 9.  Fungi in the Marine Environment: Open Questions and Unsolved Problems.

Authors:  Anthony Amend; Gaetan Burgaud; Michael Cunliffe; Virginia P Edgcomb; Cassandra L Ettinger; M H Gutiérrez; Joseph Heitman; Erik F Y Hom; Giuseppe Ianiri; Adam C Jones; Maiko Kagami; Kathryn T Picard; C Alisha Quandt; Seshagiri Raghukumar; Mertixell Riquelme; Jason Stajich; José Vargas-Muñiz; Allison K Walker; Oded Yarden; Amy S Gladfelter
Journal:  mBio       Date:  2019-03-05       Impact factor: 7.867

10.  Diversity and extracellular enzymatic activities of yeasts isolated from King George Island, the sub-Antarctic region.

Authors:  Mario Carrasco; Juan Manuel Rozas; Salvador Barahona; Jennifer Alcaíno; Víctor Cifuentes; Marcelo Baeza
Journal:  BMC Microbiol       Date:  2012-11-06       Impact factor: 3.605

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1.  Applying EDTA in Chelating Excess Metal Ions to Improve Downstream DNA Recovery from Mine Tailings for Long-Read Amplicon Sequencing of Acidophilic Fungi Communities.

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Journal:  J Fungi (Basel)       Date:  2022-04-20
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