Literature DB >> 34314221

Protein Dynamics by Two-Dimensional Infrared Spectroscopy.

Goran W Tumbic1, Md Yeathad Hossan1, Megan C Thielges1.   

Abstract

Proteins function as ensembles of interconverting structures. The motions span from picosecond bond rotations to millisecond and longer subunit displacements. Characterization of functional dynamics on all spatial and temporal scales remains challenging experimentally. Two-dimensional infrared spectroscopy (2D IR) is maturing as a powerful approach for investigating proteins and their dynamics. We outline the advantages of IR spectroscopy, describe 2D IR and the information it provides, and introduce vibrational groups for protein analysis. We highlight example studies that illustrate the power and versatility of 2D IR for characterizing protein dynamics and conclude with a brief discussion of the outlook for biomolecular 2D IR.

Entities:  

Keywords:  2D IR; infrared spectroscopy; molecular recognition; multidimensional; protein dynamics; vibrational probes

Mesh:

Substances:

Year:  2021        PMID: 34314221      PMCID: PMC8713465          DOI: 10.1146/annurev-anchem-091520-091009

Source DB:  PubMed          Journal:  Annu Rev Anal Chem (Palo Alto Calif)        ISSN: 1936-1327            Impact factor:   12.400


  135 in total

1.  Two-dimensional time-frequency ultrafast infrared vibrational echo spectroscopy.

Authors:  K A Merchant; D E Thompson; M D Fayer
Journal:  Phys Rev Lett       Date:  2001-04-23       Impact factor: 9.161

2.  Deamidation accelerates amyloid formation and alters amylin fiber structure.

Authors:  Emily B Dunkelberger; Lauren E Buchanan; Peter Marek; Ping Cao; Daniel P Raleigh; Martin T Zanni
Journal:  J Am Chem Soc       Date:  2012-07-17       Impact factor: 15.419

3.  Enhancing signal detection and completely eliminating scattering using quasi-phase-cycling in 2D IR experiments.

Authors:  Robbert Bloem; Sean Garrett-Roe; Halina Strzalka; Peter Hamm; Paul Donaldson
Journal:  Opt Express       Date:  2010-12-20       Impact factor: 3.894

4.  Automated 2D IR spectroscopy using a mid-IR pulse shaper and application of this technology to the human islet amyloid polypeptide.

Authors:  Sang-Hee Shim; David B Strasfeld; Yun L Ling; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

5.  Ion permeation in K⁺ channels occurs by direct Coulomb knock-on.

Authors:  David A Köpfer; Chen Song; Tim Gruene; George M Sheldrick; Ulrich Zachariae; Bert L de Groot
Journal:  Science       Date:  2014-10-17       Impact factor: 47.728

6.  Ultrafast Structural Fluctuations of Myoglobin-Bound Thiocyanate and Selenocyanate Ions Measured with Two-Dimensional Infrared Photon Echo Spectroscopy.

Authors:  Michał Maj; Kyungwon Kwak; Minhaeng Cho
Journal:  Chemphyschem       Date:  2015-09-11       Impact factor: 3.102

7.  Extending the vibrational lifetime of azides with heavy atoms.

Authors:  Farzaneh Chalyavi; Andrew J Schmitz; Natalie R Fetto; Matthew J Tucker; Scott H Brewer; Edward E Fenlon
Journal:  Phys Chem Chem Phys       Date:  2020-08-24       Impact factor: 3.676

8.  Amide I'-II' 2D IR spectroscopy provides enhanced protein secondary structural sensitivity.

Authors:  Lauren P Deflores; Ziad Ganim; Rebecca A Nicodemus; Andrei Tokmakoff
Journal:  J Am Chem Soc       Date:  2009-03-11       Impact factor: 15.419

9.  Synthesis of 5-Cyano-Tryptophan as a Two-Dimensional Infrared Spectroscopic Reporter of Structure.

Authors:  Farzaneh Chalyavi; Philip H Gilmartin; Andrew J Schmitz; Michael W Fennie; Matthew J Tucker
Journal:  Angew Chem Int Ed Engl       Date:  2018-05-29       Impact factor: 15.336

10.  Evidence for Intramolecular Antiparallel Beta-Sheet Structure in Alpha-Synuclein Fibrils from a Combination of Two-Dimensional Infrared Spectroscopy and Atomic Force Microscopy.

Authors:  Steven J Roeters; Aditya Iyer; Galja Pletikapić; Vladimir Kogan; Vinod Subramaniam; Sander Woutersen
Journal:  Sci Rep       Date:  2017-01-23       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.