| Literature DB >> 34312991 |
Gerard M O'Reilly1,2,3, Rob D Mitchell1,2, Biswadev Mitra1,2,3, Hamed Akhlaghi4,5, Viet Tran6,7,8, Jeremy S Furyk9,10, Paul Buntine11,12, Anselm Wong13,14,15, Vinay Gangathimmaiah16, Jonathan Knott14,17, Allison Moore18, Jung Ro Ahn19, Quillan Chan19, Andrew Wang19, Han Goh4, Ashley Loughman6,20, Nicole Lowry9, Liam Hackett11, Muhuntha Sri-Ganeshan13, Nicole Chapman16, Maximilian Raos18, Michael P Noonan1,3,21, De Villiers Smit1,2,3, Peter A Cameron1,2.
Abstract
OBJECTIVE: The aim of the present study was to describe the characteristics and outcomes of patients presenting to Australian EDs with suspected and confirmed COVID-19 during 2020, and to determine the predictors of in-hospital death for SARS-CoV-2 positive patients.Entities:
Keywords: COVID-19; emergency; isolation; quality improvement; registry
Mesh:
Year: 2021 PMID: 34312991 PMCID: PMC8420351 DOI: 10.1111/1742-6723.13837
Source DB: PubMed Journal: Emerg Med Australas ISSN: 1742-6723 Impact factor: 2.279
Number of submitted cases for analysis and report by site over study period: 1 April to 30 November 2020
| Site | SARS‐CoV‐2 positive ( | SARS‐CoV‐2 negative ( | Date range for submitted case data reported in Table |
|---|---|---|---|
| The Alfred Hospital | 59 | 7803 | 1 April to 30 November |
| Austin Hospital | 104 | 1775 | 1 July to 8 October |
| Box Hill Hospital | 24 | 1602 | 1 July to 30 September |
| Launceston General Hospital | 0 | 331 | 1 July to 30 September |
| Mersey Community Hospital | 0 | 92 | 1 April to 30 September |
| North‐West Regional Hospital | 0 | 97 | 1 July to 30 September |
| Royal Hobart Hospital | 4 | 1000 | 1 April to 30 September |
| The Royal Melbourne Hospital | 127 | 6685 | 1 July to 31 October |
| St Vincent's Hospital Melbourne | 93 | 298 | 8 May to 30 September |
| Sutherland Hospital | 0 | 1050 | 1 July to 31 October |
| Townsville University Hospital | 0 | 2740 | 1 April to 30 November |
| University Hospital Geelong | 12 | 509 | 1 July to 30 September |
| Total | 423 | 23 982 |
Table 3 reports the outcome analyses from 1 July to 30 September 2020 across all sites, restricted to SARS‐CoV‐2 positive cases submitted by Austin Hospital, The Royal Melbourne Hospital and St Vincent's Hospital Melbourne.
All dates pertain to the year 2020.
Baseline demographic and ED arrival details by SARS‐CoV‐2 result from ED PCR for the periods pertaining to Tables 3 and 4
| Variable | 1 July to 30 September 2020 (Table | 1 April to 30 November 2020 (Table | ||||
|---|---|---|---|---|---|---|
| SARS‐CoV‐2 positive ( | SARS‐CoV‐2 negative ( | OR (95% CI), | SARS‐CoV‐2 positive ( | SARS‐CoV‐2 negative ( | OR (95% CI), | |
| Age in years, mean (SD) | 58 (22) | 59 (22) | 1.0 (1.0–1.0), 0.52 | 58 (22) | 58 (22) | 1.0 (1.0–1.0), 0.84 |
| Sex, | ||||||
| Male | 200 (49) | 4412 (49) | 1.0 (0.8–1.2), 0.89 | 212 (50) | 12 213 (51) | 0.9 (0.8–1.1), 0.57 |
| Mode of transport, | ||||||
| Private transport/other | 149 (37) | 3631 (40) | Reference group | 155 (37) | 9299 (39) | Reference group |
| Ambulance – road | 247 (61) | 5073 (56) | 1.2 (1.0–1.5), 0.11 | 258 (61) | 13 852 (58) | 1.1 (0.9–1.4), 0.28 |
| Ambulance – helicopter | 0 (0) | 53 (1) | – | 0 (0) | 193 (1) | – |
| Public transport | 10 (2) | 257 (3) | 0.9 (0.5–1.8), 0.87 | 10 (2) | 628 (3) | 1.0 (0.5–1.8), 0.89 |
| Triage category, median (IQR) | 3 (2,3) | 3 (2,3) | – | 3 (3,3) | 3 (2,3) | – |
| Triage category, | ||||||
| 1 | 8 (2) | 207 (2) | Reference group | 8 (2) | 736 (3) | Reference group |
| 2 | 95 (23) | 2178 (24) | 1.1 (0.5–2.4), 0.75 | 97 (23) | 5757 (24) | 1.6 (0.8–3.2), 0.24 |
| 3 | 227 (56) | 4596 (51) | 1.3 (0.6–2.6), 0.50 | 237 (56) | 12 362 (52) | 1.8 (0.9–3.6), 0.12 |
| 4 | 74 (18) | 1818 (20) | 1.1 (0.5–2.2), 0.89 | 79 (19) | 4632 (19) | 1.6 (0.8–3.3), 0.23 |
| 5 | 2 (0) | 212 (2) | 0.2 (0.1–1.2), 0.08 | 2 (0) | 479 (2) | 0.4 (0.1–1.8), 0.23 |
−, category omitted from estimation because of perfect prediction (empty cell) or collinearity; CI, confidence interval; IQR, interquartile range; OR, odds ratio; SD, standard deviation.
Outcomes by result of ED SARS‐CoV‐2 test for the period: 1 July to 30 September 2020
| Variable | SARS‐CoV‐2 positive ( | SARS‐CoV‐2 negative ( | OR (95% CI) |
|
|---|---|---|---|---|
| Disposition destination from ED, | ||||
| Home | 67 (17) | 3369 (37) | Reference group | |
| Died in ED | 1 (0) | 16 (0) | 3.2 (0.4–24.1) | 0.27 |
| ICU | 26 (6) | 204 (2) | 6.4 (4.0–10.3) | <0.001 |
| OT | 1 (0) | 62 (1) | 0.8 (0.1–6.0) | 0.84 |
| Ward (not ICU) | 247 (61) | 3777 (42) | 3.3 (2.5–4.3) | <0.001 |
| ED Short Stay Unit | 61 (15) | 1167 (13) | 2.6 (1.9–3.8) | <0.001 |
| Transfer to other hospital | 3 (1) | 300 (3) | 0.5 (0.2–1.6) | 0.25 |
| Discharge against medical advice | 0 (0) | 82 (1) | – | – |
| Other | 0 (0) | 31 (0) | – | – |
| Invasive mechanical ventilation in hospital, | ||||
| Yes | 26 (6) | 175 (2) | 3.5 (2.3–5.2) | <0.001 |
| Discharge destination from hospital, | ||||
| Home | 290 (71) | 7213 (80) | Reference group | |
| Died in hospital | 41 (10) | 310 (3) | 3.2 (2.3–4.7) | <0.001 |
| Residential care facility | 31 (8) | 474 (5) | 1.6 (1.1–2.4) | 0.01 |
| Transfer to other hospital | 35 (9) | 728 (8) | 1.2 (0.8–1.7) | 0.33 |
| Discharge against medical advice | 1 (0) | 190 (2) | 0.1 (0.0–0.9) | 0.04 |
| Hospital in the home | 5 (1) | 45 (1) | 2.8 (1.1–7.0) | 0.03 |
| Other | 3 (1) | 53 (1) | 1.4 (0.4–4.5) | 0.57 |
−, category omitted from estimation because of perfect prediction (empty cell); CI, confidence interval; ICU, intensive care unit; OR, odds ratio; OT, operating theatre.
Results of analysis to determine univariable association and predictive performance of ED variables with death in hospital among SARS‐CoV‐2 positive patients on ED testing (for the study period: 1 April to 30 November 2020)
| Variable | Missing >20% (yes/no) | Died in hospital ( | Survived to hospital discharge ( | OR (95% CI), | Positive likelihood ratio | Negative likelihood ratio | Prediction model |
|---|---|---|---|---|---|---|---|
| Demographics | |||||||
| Age in years, mean (SD) | No | 81 (11) | 56 (22) | 1.1 (1.1–1.1), <0.001 | – | – | 1.1 (1.1–1.1), <0.001 |
| Sex, male, | No | 25 (58) | 187 (49) | 1.4 (0.7–2.7), 0.28 | – | – | – |
| Arrival details | |||||||
| Mode of transport, | No | ||||||
| Private transport/other | 12 (28) | 143 (38) | Reference group | ||||
| Ambulance – road | 31 (72) | 227 (60) | 1.6 (0.8–3.3), 0.17 | – | – | – | |
| Ambulance – helicopter | 0 (0) | 0 (0) | – | – | – | – | |
| Public transport | 0 (0) | 10 (3) | – | – | – | – | |
| Triage category, median (IQR) | No | 2 (2,3) | 3 (3,3) | <0.001 | – | – | – |
| Triage category, | No | ||||||
| 1 | 3 (7) | 5 (1) | Reference group | ||||
| 2 | 19 (44) | 78 (21) | 0.4 (0.9–1.9), 0.24 | – | – | – | |
| 3 | 15 (35) | 222 (58) | 0.1 (0.0–0.5), 0.005 | – | – | – | |
| 4 | 6 (14) | 73 (19) | 0.1 (0.0–0.7), 0.02 | – | – | – | |
| 5 | 0 (0) | 2 (1) | – | – | – | – | |
| Triage category of 1 or 2, | No | 22 (51) | 83 (22) | 3.7 (2.0–7.1), <0.001 | 2.3 | 0.6 | 3.5 (1.3–9.4), 0.012 |
| Presenting complaint, | |||||||
| Shortness of breath | Yes | 15 (52) | 143 (457) | 0.8 (0.4–1.7), 0.58 | – | – | – |
| Cough | Yes | 14 (52) | 150 (61) | 0.7 (0.3–1.5), 0.35 | – | – | – |
| Anosmia or dysgeusia | Yes | 1 (6) | 35 (18) | 0.3 (0.0–2.1), 0.21 | – | – | – |
| Sore throat | Yes | 2 (30) | 63 (29) | 0.3 (0.1–1.1), 0.07 | – | – | – |
| Runny nose | Yes | 1 (4) | 44 (21) | 0.2 (0.0–1.3), 0.09 | – | – | – |
| Fever | Yes | 14 (52) | 146 (59) | 0.8 (0.3–1.7), 0.48 | – | – | – |
| Fatigue | Yes | 13 (57) | 105 (49) | 1.3 (0.6–3.2), 0.51 | – | – | – |
| Myalgia | Yes | 3 (14) | 74 (35) | 0.3 (0.1–1.1), 0.07 | – | – | – |
| Diarrhoea | Yes | 2 (9) | 43 (20) | 0.4 (0.1–1.7), 0.15 | – | – | – |
| Other relevant history, | |||||||
| Residential aged care facility | Yes | 20 (69) | 50 (20) | 9.1 (3.9–21.2), <0.001 | 3.5 | 0.4 | – |
| Comorbidities, | |||||||
| Chronic respiratory | Yes | 10 (36) | 55 (22) | 2.0 (0.9–4.6), 0.10 | – | – | – |
| Obesity | Yes | 7 (25) | 22 (9) | 3.2 (1.2–8.4), 0.02 | 2.7 | 0.8 | 4.2 (1.2–14.3), 0.024 |
| Smoker | Yes | 7 (30) | 44 (20) | 1.8 (0.7–4.6), 0.23 | – | – | – |
| Chronic cardiac | Yes | 16 (55) | 43 (17) | 6.0 (2.7–13.3), <0.001 | 3.2 | 0.5 | – |
| Hypertension | Yes | 19 (66) | 77 (30) | 4.3 (1.9–9.8), <0.001 | 2.2 | 0.5 | – |
| Diabetes mellitus | Yes | 9 (32) | 61 (24) | 1.5 (0.6–3.5), 0.35 | – | – | – |
| Malignant neoplasm | Yes | 2 (7) | 13 (5) | 1.4 (0.3–6.6), 0.66 | – | – | – |
| Immunosuppressive pharmacotherapy | Yes | 4 (14) | 11 (4) | 3.6 (1.1–12.3), 0.04 | 3.3 | 0.9 | 8.2 (1.8–36.7), 0.006 |
| Examination – first vital signs in ED | |||||||
| Temperature (°C), mean (SD) | No | 37.3 (1.3) | 37.2 (1.0) | 1.0 (0.8–1.4), 0.85 | – | – | – |
| Fever recorded (temperature ≥38°C), | 14 (33) | 96 (26) | 1.4 (0.7–2.8), 0.31 | – | – | – | |
| SaO2 (%), mean (SD) | No | 94 (5) | 96 (4) | 0.9 (0.9–1.0), 0.01 | – | – | – |
| Hypoxia (SaO2 <92%), | 8 (20) | 35 (10) | 2.3 (1.0–5.5), 0.047 | 2.1 | 0.9 | – | |
| Systolic blood pressure (mmHg), mean (SD) | No | 130 (30) | 132 (23) | 1.0 (1.0–1.0), 0.54 | – | – | – |
| Hypotension (SBP <100 mmHg), | 4 (10) | 18 (5) | 2.1 (0.7–6.4), 0.21 | – | – | – | |
| Examination – other | |||||||
| Abnormality on chest auscultation, | Yes | 15 (54) | 91 (41) | 1.7 (0.7–3.7), 0.23 | – | – | – |
| Investigations – imaging | |||||||
| CXR report, | Yes | 10 (34) | 84 (38) | Reference | – | – | – |
| Yes – bilateral infiltrates | 9 (31) | 101 (46) | 0.7 (0.3–1.9), 0.55 | – | – | – | |
| Yes – other abnormality | 10 (34) | 37 (17) | 2.3 (0.3–1.9), 0.09 | – | – | – | |
| Investigations – blood tests | |||||||
| White blood cell count (×109/L), mean (SD) | No | 8 (4) | 7 (3) | 1.1 (1.0–1.2), 0.04 | – | – | – |
| Leucocytosis (WCC >11.0 [×109/L]), | 5 (15) | 26 (9) | 1.8 (0.3–4.9), 0.28 | – | – | – | |
| Platelet count (×109/L), mean (SD) | No | 205 (84) | 232 (96) | 1.0 (1.0–1.0), 0.16 | – | – | – |
| Thrombocytopaenia (platelet count <150 ×109/L), | 9 (32) | 44 (16) | 2.4 (1.0–5.8), 0.04 | 2.0 | 0.8 | – | |
| AIC | 116 | ||||||
| AUROC | 0.89 (0.84–0.94) | ||||||
Clinical variables with a statistically significant univariable association with dying in hospital.
May not have been performed.
−, not meeting criteria for calculation of likelihood ratios (no statistically significant association with SARS‐CoV‐2 test result) and/or not included in final prediction model; AIC, Akaike information criteria; AUROC, area under the receiver operating characteristic curve; CI, confidence interval; IQR, interquartile range; OR, odds ratio; SBP, systolic blood pressure; WCC, white blood cell count.
Figure 1Number of cases who died in hospital versus survived to hospital discharge by age.