Literature DB >> 34310331

Mixture Model Framework for Traumatic Brain Injury Prognosis Using Heterogeneous Clinical and Outcome Data.

Alan D Kaplan, Qi Cheng, K Aditya Mohan, Lindsay D Nelson, Sonia Jain, Harvey Levin, Abel Torres-Espin, Austin Chou, J Russell Huie, Adam R Ferguson, Michael McCrea, Joseph Giacino, Shivshankar Sundaram, Amy J Markowitz, Geoffrey T Manley.   

Abstract

Prognoses of Traumatic Brain Injury (TBI) outcomes are neither easily nor accurately determined from clinical indicators. This is due in part to the heterogeneity of damage inflicted to the brain, ultimately resulting in diverse and complex outcomes. Using a data-driven approach on many distinct data elements may be necessary to describe this large set of outcomes and thereby robustly depict the nuanced differences among TBI patients' recovery. In this work, we develop a method for modeling large heterogeneous data types relevant to TBI. Our approach is geared toward the probabilistic representation of mixed continuous and discrete variables with missing values. The model is trained on a dataset encompassing a variety of data types, including demographics, blood-based biomarkers, and imaging findings. In addition, it includes a set of clinical outcome assessments at 3, 6, and 12 months post-injury. The model is used to stratify patients into distinct groups in an unsupervised learning setting. We use the model to infer outcomes using input data, and show that the collection of input data reduces uncertainty of outcomes over a baseline approach. In addition, we quantify the performance of a likelihood scoring technique that can be used to self-evaluate the extrapolation risk of prognosis on unseen patients.

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Year:  2022        PMID: 34310331      PMCID: PMC8789941          DOI: 10.1109/JBHI.2021.3099745

Source DB:  PubMed          Journal:  IEEE J Biomed Health Inform        ISSN: 2168-2194            Impact factor:   5.772


  31 in total

Review 1.  Common data elements for traumatic brain injury: recommendations from the interagency working group on demographics and clinical assessment.

Authors:  Andrew I Maas; Cynthia L Harrison-Felix; David Menon; P David Adelson; Tom Balkin; Ross Bullock; Doortje C Engel; Wayne Gordon; Jean Langlois Orman; Henry L Lew; Claudia Robertson; Nancy Temkin; Alex Valadka; Mieke Verfaellie; Mark Wainwright; David W Wright; Karen Schwab
Journal:  Arch Phys Med Rehabil       Date:  2010-11       Impact factor: 3.966

2.  The diagnosis of head injury requires a classification based on computed axial tomography.

Authors:  L F Marshall; S B Marshall; M R Klauber; M Van Berkum Clark; H Eisenberg; J A Jane; T G Luerssen; A Marmarou; M A Foulkes
Journal:  J Neurotrauma       Date:  1992-03       Impact factor: 5.269

3.  Support vector machine learning from heterogeneous data: an empirical analysis using protein sequence and structure.

Authors:  Darrin P Lewis; Tony Jebara; William Stafford Noble
Journal:  Bioinformatics       Date:  2006-09-11       Impact factor: 6.937

4.  Estimating the global incidence of traumatic brain injury.

Authors:  Michael C Dewan; Abbas Rattani; Saksham Gupta; Ronnie E Baticulon; Ya-Ching Hung; Maria Punchak; Amit Agrawal; Amos O Adeleye; Mark G Shrime; Andrés M Rubiano; Jeffrey V Rosenfeld; Kee B Park
Journal:  J Neurosurg       Date:  2018-04-01       Impact factor: 5.115

5.  Learning probabilistic phenotypes from heterogeneous EHR data.

Authors:  Rimma Pivovarov; Adler J Perotte; Edouard Grave; John Angiolillo; Chris H Wiggins; Noémie Elhadad
Journal:  J Biomed Inform       Date:  2015-10-14       Impact factor: 6.317

Review 6.  Traumatic brain injury: integrated approaches to improve prevention, clinical care, and research.

Authors:  Andrew I R Maas; David K Menon; P David Adelson; Nada Andelic; Michael J Bell; Antonio Belli; Peter Bragge; Alexandra Brazinova; András Büki; Randall M Chesnut; Giuseppe Citerio; Mark Coburn; D Jamie Cooper; A Tamara Crowder; Endre Czeiter; Marek Czosnyka; Ramon Diaz-Arrastia; Jens P Dreier; Ann-Christine Duhaime; Ari Ercole; Thomas A van Essen; Valery L Feigin; Guoyi Gao; Joseph Giacino; Laura E Gonzalez-Lara; Russell L Gruen; Deepak Gupta; Jed A Hartings; Sean Hill; Ji-Yao Jiang; Naomi Ketharanathan; Erwin J O Kompanje; Linda Lanyon; Steven Laureys; Fiona Lecky; Harvey Levin; Hester F Lingsma; Marc Maegele; Marek Majdan; Geoffrey Manley; Jill Marsteller; Luciana Mascia; Charles McFadyen; Stefania Mondello; Virginia Newcombe; Aarno Palotie; Paul M Parizel; Wilco Peul; James Piercy; Suzanne Polinder; Louis Puybasset; Todd E Rasmussen; Rolf Rossaint; Peter Smielewski; Jeannette Söderberg; Simon J Stanworth; Murray B Stein; Nicole von Steinbüchel; William Stewart; Ewout W Steyerberg; Nino Stocchetti; Anneliese Synnot; Braden Te Ao; Olli Tenovuo; Alice Theadom; Dick Tibboel; Walter Videtta; Kevin K W Wang; W Huw Williams; Lindsay Wilson; Kristine Yaffe
Journal:  Lancet Neurol       Date:  2017-11-06       Impact factor: 44.182

7.  Mild Traumatic Brain Injury: Longitudinal Study of Cognition, Functional Status, and Post-Traumatic Symptoms.

Authors:  Sureyya Dikmen; Joan Machamer; Nancy Temkin
Journal:  J Neurotrauma       Date:  2016-12-02       Impact factor: 5.269

8.  Detection of Mild Traumatic Brain Injury by Machine Learning Classification Using Resting State Functional Network Connectivity and Fractional Anisotropy.

Authors:  Victor M Vergara; Andrew R Mayer; Eswar Damaraju; Kent A Kiehl; Vince Calhoun
Journal:  J Neurotrauma       Date:  2016-11-21       Impact factor: 5.269

9.  Prediction of outcome after moderate and severe traumatic brain injury: external validation of the International Mission on Prognosis and Analysis of Clinical Trials (IMPACT) and Corticoid Randomisation After Significant Head injury (CRASH) prognostic models.

Authors:  Bob Roozenbeek; Hester F Lingsma; Fiona E Lecky; Juan Lu; James Weir; Isabella Butcher; Gillian S McHugh; Gordon D Murray; Pablo Perel; Andrew I Maas; Ewout W Steyerberg
Journal:  Crit Care Med       Date:  2012-05       Impact factor: 7.598

10.  Uncovering precision phenotype-biomarker associations in traumatic brain injury using topological data analysis.

Authors:  Jessica L Nielson; Shelly R Cooper; John K Yue; Marco D Sorani; Tomoo Inoue; Esther L Yuh; Pratik Mukherjee; Tanya C Petrossian; Jesse Paquette; Pek Y Lum; Gunnar E Carlsson; Mary J Vassar; Hester F Lingsma; Wayne A Gordon; Alex B Valadka; David O Okonkwo; Geoffrey T Manley; Adam R Ferguson
Journal:  PLoS One       Date:  2017-03-03       Impact factor: 3.240

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