Literature DB >> 34308438

Demographic-Guided Attention in Recurrent Neural Networks for Modeling Neuropathophysiological Heterogeneity.

Nicha C Dvornek1,2, Xiaoxiao Li2, Juntang Zhuang2, Pamela Ventola3, James S Duncan1,2,4,5.   

Abstract

Heterogeneous presentation of a neurological disorder suggests potential differences in the underlying pathophysiological changes that occur in the brain. We propose to model heterogeneous patterns of functional network differences using a demographic-guided attention (DGA) mechanism for recurrent neural network models for prediction from functional magnetic resonance imaging (fMRI) time-series data. The context computed from the DGA head is used to help focus on the appropriate functional networks based on individual demographic information. We demonstrate improved classification on 3 subsets of the ABIDE I dataset used in published studies that have previously produced state-of-the-art results, evaluating performance under a leave-one-site-out cross-validation framework for better generalizeability to new data. Finally, we provide examples of interpreting functional network differences based on individual demographic variables.

Entities:  

Year:  2020        PMID: 34308438      PMCID: PMC8299434          DOI: 10.1007/978-3-030-59861-7_37

Source DB:  PubMed          Journal:  Mach Learn Med Imaging


  10 in total

1.  Neural signatures of autism.

Authors:  Martha D Kaiser; Caitlin M Hudac; Sarah Shultz; Su Mei Lee; Celeste Cheung; Allison M Berken; Ben Deen; Naomi B Pitskel; Daniel R Sugrue; Avery C Voos; Celine A Saulnier; Pamela Ventola; Julie M Wolf; Ami Klin; Brent C Vander Wyk; Kevin A Pelphrey
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-15       Impact factor: 11.205

2.  The maturing architecture of the brain's default network.

Authors:  Damien A Fair; Alexander L Cohen; Nico U F Dosenbach; Jessica A Church; Francis M Miezin; Deanna M Barch; Marcus E Raichle; Steven E Petersen; Bradley L Schlaggar
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-05       Impact factor: 11.205

3.  Deep Visual-Semantic Alignments for Generating Image Descriptions.

Authors:  Andrej Karpathy; Li Fei-Fei
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-08-05       Impact factor: 6.226

4.  Learning Generalizable Recurrent Neural Networks from Small Task-fMRI Datasets.

Authors:  Nicha C Dvornek; Daniel Yang; Pamela Ventola; James S Duncan
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09-13

5.  COMBINING PHENOTYPIC AND RESTING-STATE FMRI DATA FOR AUTISM CLASSIFICATION WITH RECURRENT NEURAL NETWORKS.

Authors:  Nicha C Dvornek; Pamela Ventola; James S Duncan
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24

6.  Identifying Autism from Resting-State fMRI Using Long Short-Term Memory Networks.

Authors:  Nicha C Dvornek; Pamela Ventola; Kevin A Pelphrey; James S Duncan
Journal:  Mach Learn Med Imaging       Date:  2017-09-07

7.  Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example.

Authors:  Alexandre Abraham; Michael P Milham; Adriana Di Martino; R Cameron Craddock; Dimitris Samaras; Bertrand Thirion; Gael Varoquaux
Journal:  Neuroimage       Date:  2016-11-16       Impact factor: 7.400

8.  Large-scale automated synthesis of human functional neuroimaging data.

Authors:  Tal Yarkoni; Russell A Poldrack; Thomas E Nichols; David C Van Essen; Tor D Wager
Journal:  Nat Methods       Date:  2011-06-26       Impact factor: 28.547

9.  Identification of autism spectrum disorder using deep learning and the ABIDE dataset.

Authors:  Anibal Sólon Heinsfeld; Alexandre Rosa Franco; R Cameron Craddock; Augusto Buchweitz; Felipe Meneguzzi
Journal:  Neuroimage Clin       Date:  2017-08-30       Impact factor: 4.881

10.  The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism.

Authors:  A Di Martino; C-G Yan; Q Li; E Denio; F X Castellanos; K Alaerts; J S Anderson; M Assaf; S Y Bookheimer; M Dapretto; B Deen; S Delmonte; I Dinstein; B Ertl-Wagner; D A Fair; L Gallagher; D P Kennedy; C L Keown; C Keysers; J E Lainhart; C Lord; B Luna; V Menon; N J Minshew; C S Monk; S Mueller; R-A Müller; M B Nebel; J T Nigg; K O'Hearn; K A Pelphrey; S J Peltier; J D Rudie; S Sunaert; M Thioux; J M Tyszka; L Q Uddin; J S Verhoeven; N Wenderoth; J L Wiggins; S H Mostofsky; M P Milham
Journal:  Mol Psychiatry       Date:  2013-06-18       Impact factor: 15.992

  10 in total

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