Literature DB >> 30288208

COMBINING PHENOTYPIC AND RESTING-STATE FMRI DATA FOR AUTISM CLASSIFICATION WITH RECURRENT NEURAL NETWORKS.

Nicha C Dvornek1, Pamela Ventola2, James S Duncan3,1,4.   

Abstract

Accurate identification of autism spectrum disorder (ASD) from resting-state functional magnetic resonance imaging (rsfMRI) is a challenging task due in large part to the heterogeneity of ASD. Recent work has shown better classification accuracy using a recurrent neural network with rsfMRI time-series as inputs. However, phenotypic features, which are often available and likely carry predictive information, are excluded from the model, and combining such data with rsfMRI into the recurrent neural network is not a straightforward task. In this paper, we present several methodologies for incorporating phenotypic data with rsfMRI into a single deep learning framework for classifying ASD. We test the proposed architectures using a cross-validation framework on the large, heterogeneous first cohort from the Autism Brain Imaging Data Exchange. Our best model achieved an accuracy of 70.1%, outperforming prior work.

Entities:  

Keywords:  Autism Spectrum Disorders; Classification; Neural Networks; Phenotypic Data; Resting-state fMRI

Year:  2018        PMID: 30288208      PMCID: PMC6166875          DOI: 10.1109/ISBI.2018.8363676

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  8 in total

1.  Long short-term memory.

Authors:  S Hochreiter; J Schmidhuber
Journal:  Neural Comput       Date:  1997-11-15       Impact factor: 2.026

2.  Functional connectivity in a baseline resting-state network in autism.

Authors:  Vladimir L Cherkassky; Rajesh K Kana; Timothy A Keller; Marcel Adam Just
Journal:  Neuroreport       Date:  2006-11-06       Impact factor: 1.837

3.  A whole brain fMRI atlas generated via spatially constrained spectral clustering.

Authors:  R Cameron Craddock; G Andrew James; Paul E Holtzheimer; Xiaoping P Hu; Helen S Mayberg
Journal:  Hum Brain Mapp       Date:  2011-07-18       Impact factor: 5.038

4.  Identifying Autism from Resting-State fMRI Using Long Short-Term Memory Networks.

Authors:  Nicha C Dvornek; Pamela Ventola; Kevin A Pelphrey; James S Duncan
Journal:  Mach Learn Med Imaging       Date:  2017-09-07

5.  Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example.

Authors:  Alexandre Abraham; Michael P Milham; Adriana Di Martino; R Cameron Craddock; Dimitris Samaras; Bertrand Thirion; Gael Varoquaux
Journal:  Neuroimage       Date:  2016-11-16       Impact factor: 7.400

6.  Using Functional or Structural Magnetic Resonance Images and Personal Characteristic Data to Identify ADHD and Autism.

Authors:  Sina Ghiassian; Russell Greiner; Ping Jin; Matthew R G Brown
Journal:  PLoS One       Date:  2016-12-28       Impact factor: 3.240

7.  Multisite functional connectivity MRI classification of autism: ABIDE results.

Authors:  Jared A Nielsen; Brandon A Zielinski; P Thomas Fletcher; Andrew L Alexander; Nicholas Lange; Erin D Bigler; Janet E Lainhart; Jeffrey S Anderson
Journal:  Front Hum Neurosci       Date:  2013-09-25       Impact factor: 3.169

8.  The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism.

Authors:  A Di Martino; C-G Yan; Q Li; E Denio; F X Castellanos; K Alaerts; J S Anderson; M Assaf; S Y Bookheimer; M Dapretto; B Deen; S Delmonte; I Dinstein; B Ertl-Wagner; D A Fair; L Gallagher; D P Kennedy; C L Keown; C Keysers; J E Lainhart; C Lord; B Luna; V Menon; N J Minshew; C S Monk; S Mueller; R-A Müller; M B Nebel; J T Nigg; K O'Hearn; K A Pelphrey; S J Peltier; J D Rudie; S Sunaert; M Thioux; J M Tyszka; L Q Uddin; J S Verhoeven; N Wenderoth; J L Wiggins; S H Mostofsky; M P Milham
Journal:  Mol Psychiatry       Date:  2013-06-18       Impact factor: 15.992

  8 in total
  8 in total

1.  Demographic-Guided Attention in Recurrent Neural Networks for Modeling Neuropathophysiological Heterogeneity.

Authors:  Nicha C Dvornek; Xiaoxiao Li; Juntang Zhuang; Pamela Ventola; James S Duncan
Journal:  Mach Learn Med Imaging       Date:  2020-09-29

2.  Robust, Generalizable, and Interpretable Artificial Intelligence-Derived Brain Fingerprints of Autism and Social Communication Symptom Severity.

Authors:  Kaustubh Supekar; Srikanth Ryali; Rui Yuan; Devinder Kumar; Carlo de Los Angeles; Vinod Menon
Journal:  Biol Psychiatry       Date:  2022-02-16       Impact factor: 12.810

Review 3.  Machine Learning Methods for Diagnosing Autism Spectrum Disorder and Attention- Deficit/Hyperactivity Disorder Using Functional and Structural MRI: A Survey.

Authors:  Taban Eslami; Fahad Almuqhim; Joseph S Raiker; Fahad Saeed
Journal:  Front Neuroinform       Date:  2021-01-20       Impact factor: 4.081

4.  rs-fMRI and machine learning for ASD diagnosis: a systematic review and meta-analysis.

Authors:  Caio Pinheiro Santana; Emerson Assis de Carvalho; Igor Duarte Rodrigues; Guilherme Sousa Bastos; Adler Diniz de Souza; Lucelmo Lacerda de Brito
Journal:  Sci Rep       Date:  2022-04-11       Impact factor: 4.379

5.  A Deep Spatiotemporal Attention Network for Mild Cognitive Impairment Identification.

Authors:  Quan Feng; Yongjie Huang; Yun Long; Le Gao; Xin Gao
Journal:  Front Aging Neurosci       Date:  2022-07-18       Impact factor: 5.702

Review 6.  Automatic autism spectrum disorder detection using artificial intelligence methods with MRI neuroimaging: A review.

Authors:  Parisa Moridian; Navid Ghassemi; Mahboobeh Jafari; Salam Salloum-Asfar; Delaram Sadeghi; Marjane Khodatars; Afshin Shoeibi; Abbas Khosravi; Sai Ho Ling; Abdulhamit Subasi; Roohallah Alizadehsani; Juan M Gorriz; Sara A Abdulla; U Rajendra Acharya
Journal:  Front Mol Neurosci       Date:  2022-10-04       Impact factor: 6.261

7.  DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network.

Authors:  Md Shale Ahammed; Sijie Niu; Md Rishad Ahmed; Jiwen Dong; Xizhan Gao; Yuehui Chen
Journal:  Front Neuroinform       Date:  2021-06-24       Impact factor: 4.081

Review 8.  Artificial intelligence for precision medicine in neurodevelopmental disorders.

Authors:  Mohammed Uddin; Yujiang Wang; Marc Woodbury-Smith
Journal:  NPJ Digit Med       Date:  2019-11-21
  8 in total

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